Nematolebias whitei (Rio pearlfish): 119425596
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Entry
119425596 CDS
T08042
Symbol
smarcc1b
Name
(RefSeq) SWI/SNF complex subunit SMARCC1b
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119425596 (smarcc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119425596 (smarcc1b)
03036 Chromosome and associated proteins [BR:
nwh03036
]
119425596 (smarcc1b)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
119425596 (smarcc1b)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
119425596 (smarcc1b)
PBAF complex
119425596 (smarcc1b)
GBAF(ncBAF) complex
119425596 (smarcc1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
SWIRM-assoc_3
Myb_DNA-bind_6
SpeFL
DUF919
Motif
Other DBs
NCBI-GeneID:
119425596
NCBI-ProteinID:
XP_037549055
LinkDB
All DBs
Position
19:22524947..22538418
Genome browser
AA seq
942 aa
AA seq
DB search
MSGGANFGFPGSSQASLGTFAHRKKDSSPSARFWESLDTLAQLELVRQWLGKHYKKYVLV
DAPSCQALASLALQLLQFQEDAFGRQATNPALTKLPAHCFMDLRPGGGLCHILGTTYKFK
VEQGWRRFDLQNPSRAERNVEMFGEIDKALLQNNCMSMPVVYLDPTVDPELFSRLSGIII
KHKGAVTEDRTVASHHVYVSHASPAEDEWMRPVMRKDKHVLVHWGMHPDSYDSWLSSSDV
DGEVEELPHTERPWRVHAGWIVDTDVFNEWMNEEDYCVNERNMSIILRRRIQLREEQDLR
SIPAKKRRLAPSPSTEGRKKGKKGRRHGHQDEEPEEDLTKDMEDPTPVPNMEEVVLPKNV
NLKKDSENTPVKGGIMADLDDQEDDFPGREDDEGRGESSRLSEGEDSITEQTHHIIIPSY
TSWFNYNSIHSIEKRALPEFFTGKNKSKSPEIYLAYRNFMIDTYRLNPQEYLSSTSCRRN
LTGDVCALIRVHSFLEQWGLINYQVDAESRPLPMGPPPTPHFNVLADTPSGLAPLQHKPL
QVSASQHMLYFPEKSREKPSDCQNFGLRTDVYARKHPKTKGANAGREWTEQETLLLLEAL
EVYRDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSSASLGPLAYQPVPFSHSENPV
MSTVAFLASVVDPRVASAAAKAALEDFSKVQEESLDKLSEASNQLEKTDVMEAENLDSHQ
VPVRVDGVKMEPGISKMEEDLVKREHVENMLEEERDGGADEDESRQDGEGDDGSRVMEMD
LVEASVSTAAASALASAASKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETI
MDREKEALEQQRQQLLEERQTFHTEQLKQAEMKVRQQREQQGQSGYTMQHSGQTVPNRMM
PVGGNAQTIAPRHPGAPNGMYPSSQPDGMPSAQTAPPPSSHS
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgtccggcggagcaaacttcgggtttccaggttcaagccaagccagcttggggacattt
gcgcaccggaaaaaagatagcagcccgtctgctaggttctgggagagtctcgacacttta
gcacagctggagcttgtgcgacagtggctcgggaagcattacaaaaagtatgtgttggtg
gatgccccatcttgccaggctcttgcttcactcgccttgcagcttcttcagtttcaagaa
gatgcctttgggagacaagctactaatcctgcacttacaaaattaccggcgcactgcttt
atggacttgaggccaggtggtggactctgtcacattcttgggactacttacaagtttaag
gttgagcagggctggcgaaggtttgacttgcagaatccatcaagagctgagaggaatgtg
gagatgtttggtgaaattgataaagctctactccagaacaattgcatgtcaatgcctgtg
gtataccttgaccctactgttgatccagagctgttcagcagattaagtggtatcatcatc
aaacacaagggtgccgtcactgaggacagaacagttgccagtcatcatgtctatgtctca
catgcttctccagcagaagatgagtggatgcgccctgttatgcgaaaagacaagcatgtc
ctggtccattggggtatgcaccctgacagttatgacagttggctgtcctcgagtgatgtt
gatggagaggttgaagagttgccacacacagaaagaccatggagggttcatgctggttgg
attgtagacacagacgtcttcaatgagtggatgaacgaggaagactattgtgtgaatgag
agaaacatgtcgattatcctccgccgacgaattcagctccgtgaagaacaggacttaaga
tctatacctgccaaaaaacgaagactcgcaccctctccctccactgaaggcaggaagaaa
ggaaagaaggggagaaggcatgggcatcaggatgaagaaccagaagaggacctaaccaag
gacatggaggatcctacgcctgtgcctaacatggaggaagtcgtactgcccaagaatgtg
aacctaaagaaagacagtgaaaatactccagtaaaaggagggatcatggctgacctcgat
gatcaggaagatgactttccaggaagggaagatgacgagggtcgaggagagagctcacgc
ctgtcagagggagaggacagcatcacagagcaaactcaccacattataataccaagttac
acatcgtggttcaattacaacagcattcactcaatagagaaacgtgctttgcctgaattc
ttcactgggaagaacaaatcaaaatctccagagatctacctggcatatcgtaacttcatg
atcgacacgtaccggctcaacccgcaggaatatctcagctcaacgtcctgcaggcgcaac
ctcacaggcgacgtctgcgctctcataagggttcattcatttttggagcaatggggttta
atcaactaccaagtggatgcagagagtagaccccttcctatggggcctccccccacgcct
catttcaatgtgctggctgacactccatctgggctggctcccttacagcacaaaccccta
caggtgtccgcctctcagcacatgttgtatttcccagagaaaagcagagagaaaccttca
gactgccaaaactttggtctgcgcactgacgtttacgccaggaaacacccaaagacaaaa
ggagcaaatgcaggacgagaatggacagagcaggagacacttttactattagaggcatta
gaggtctacagagatgactggaataaagtatcggagcacgttggctccagaacacaagac
gaatgtatccttcacttcttgcgtctgccgatagaagacccttacctggaggactcgtca
gcctctctggggccgctggcgtatcagcctgtgcctttcagccattcagaaaaccccgtg
atgagcactgtggccttcctggcatctgtggtggatccacgagtggcatcagctgcagct
aaggccgcactggaggatttctccaaagtgcaggaggaatcattggataaactgtctgaa
gcatccaaccagttagaaaaaacagatgtgatggaagcagaaaatctggactcccatcag
gtccctgtgagggttgatggggtcaagatggaaccaggcatttcaaaaatggaggaagat
ctggttaaaagagaacatgtagaaaatatgctggaagaggaaagagatggcggagcagat
gaagatgagagtagacaagatggagaaggggatgatgggagtagagtgatggagatggat
ctggtggaggccagcgtttccacagcagcagcatccgctctggcctctgctgcctcaaag
gcaaagcatttagcagcagtagaagagaggaagattaaatccctggtggccctgctagtg
gagacccagatgaagaaattagagatcaaactgagacactttgaagaactggagaccatc
atggaccgagagaaagaagccttggagcagcagcggcaacaactgcttgaagagaggcaa
acttttcacaccgagcagctgaagcaggcagagatgaaggtccgccagcagagggagcag
caggggcagtcgggttacacaatgcagcattcaggtcagaccgtgcccaacaggatgatg
cctgttgggggtaacgcccaaacaatagccccccgacatcccggagctcccaatggaatg
tacccgtcctcacagcccgatgggatgccatctgctcagaccgctcctccaccatccagt
cacagctga
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