Nematolebias whitei (Rio pearlfish): 119425598
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Entry
119425598 CDS
T08042
Name
(RefSeq) probable histone deacetylase 1-B isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03082
ATP-dependent chromatin remodeling
nwh03083
Polycomb repressive complex
nwh04110
Cell cycle
nwh04330
Notch signaling pathway
nwh04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
119425598
03083 Polycomb repressive complex
119425598
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
119425598
04350 TGF-beta signaling pathway
119425598
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119425598
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nwh03036
]
119425598
Enzymes [BR:
nwh01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
119425598
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
119425598
HDAC complexes
Sin3A-HDAC complex
119425598
BRAF-HDAC complex
119425598
REST complex
119425598
SHIP complex
119425598
MiDAC complex
119425598
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
119425598
Heterochromatin formation proteins
Other heterochromatin formation proteins
119425598
Chromatin remodeling factors
NuRD complex
119425598
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
119425598
NCBI-ProteinID:
XP_037549057
LinkDB
All DBs
Position
19:15613630..15624002
Genome browser
AA seq
507 aa
AA seq
DB search
MALSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAS
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSTGGSVAG
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYIKSFNLPLLMLGG
GGYTIRNVARCWTFETAVALDCSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQAIPEDAPHPDSGDEDEEDPDKRVSIRAHDKRIACEEEF
SDSEDEAEGQGGGRRNASNHKKLKRLKKEEEKEGEEKKGEQRTHKKLTALKGFLRAKELL
YFVEVKEEDKEEEKMDTSGPKEEMKTT
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgtctcaaggaacaaagaaaaaagtttgctattactatgacggtgatgtggga
aactactactatggtcaaggccatcccatgaaaccccacaggatccgcatgacgcacaac
ctcctccttaactatggactttacaggaaaatggagatctacagaccacacaaagccagt
gctgaggagatgacgaagtaccacagtgacgactacattaagttcctgaggtccatccgc
ccagacaacatgtctgagtacagtaaacaaatgcagagatttaacgtcggcgaggactgt
ccagttttcgatggactctttgagttttgtcagctctccacaggcggctctgtagccgga
gcggtgaagctcaacaagcagcagacggacatagcagtcaactgggctggtggacttcac
cacgccaagaagtctgaggcttctggtttctgctacgtcaacgacatcgtcctcgccatc
ctggagctcctcaaataccaccagagggttttgtacatcgatatcgacatccaccatggc
gatggagtagaggaggccttttacaccacagacagggtcatgactgtctcattccacaaa
tatggagaatactttcctggcactggagacctgagagacattggagcaggaaagggcaag
tactatgctgtgaactaccctcttagagacggcattgacgatgagtcatatgaagccatt
ttcaagcccatcatggctaaggtgatggagatgtaccagccgagtgctgtggttctgcag
tgtggagcagattctctttctggtgacaggctgggctgcttcaacctgaccattaaaggc
cacgcgaagtgcgtcgagtacatcaaaagtttcaaccttcctctgctgatgctgggtgga
ggaggatacaccatccgcaatgtggcccgttgctggacttttgaaaccgccgtggccttg
gactgctccatccccaacgagctgccctacaacgattattttgagtactttggacccgat
ttcaagctgcacattagcccgtccaacatgaccaaccagaacaccaacgagtacctggag
aagatcaaacagcggctctttgaaaacctccgcatgctgcctcacgcccctggtgtccag
atgcaggccatcccagaggacgctcctcacccagacagtggagatgaggacgaggaagac
ccagacaagcgtgtctctatccgtgcccatgacaagaggatagcctgtgaggaagagttt
tcagactctgaggacgaggccgaggggcagggcgggggtcgcaggaatgcctcaaaccac
aaaaagctaaaacgactgaagaaggaggaagagaaagaaggagaggaaaagaaaggtgag
cagcgcacccacaaaaaactaacggcattgaaaggttttctgagagctaaagaactgctt
tactttgtagaagtgaaagaagaagacaaagaggaagagaagatggacacatcaggacca
aaagaagaaatgaagaccacttga
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