Nematolebias whitei (Rio pearlfish): 119425951
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Entry
119425951 CDS
T08042
Name
(RefSeq) probable ATP-dependent RNA helicase ddx6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119425951
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119425951
03036 Chromosome and associated proteins [BR:
nwh03036
]
119425951
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119425951
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
119425951
mRNA degradation factors
5'-3' decay
Decapping complex
119425951
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Gene silencing
piRNA pathway
119425951
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
119425951
NCBI-ProteinID:
XP_037549436
LinkDB
All DBs
Position
19:complement(39011193..39027852)
Genome browser
AA seq
488 aa
AA seq
DB search
MSTTRAESVGPLVLGLNKQNGQLRGQNKSASVQAGPPAPGKTLGAPQKVGGANQDGGIKF
GDDWKRSLHLPPKDTRVKTSDVTATKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIP
IALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDHIQAMVMVPTRELALQVSQICIQIS
KHLGGVKVMATTGGTNLRDDIMRLDETVHVVIATPGRILDLIKKGVAKVDRVQMMVMDEA
DKLLSQDFVVLIEDIISFLAKNRQILLYSATFPISVQKFMVKHLQKPYEINLMEELTLKG
ITQFYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIHAKM
MQEYRNRVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF
GHLGLAINLITSEDRFNLKSIEEQLVTDIKPIPGSIDKSLYVAEYHSAGGDCEVEEVEEK
LERHLDST
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgacccgagcggagagcgtgggcccgctcgtcctgggactgaacaagcagaac
gggcagctcagaggacaaaacaagtccgcgtcggtccaggccgggcccccggctccagga
aagactctgggcgctccgcagaaagtcggcggcgccaaccaggacggcggcatcaagttc
ggagacgactggaaaagaagcctccatctgccgccgaaggacaccagggtcaaaacctca
gacgtcacagccaccaagggcaacgagtttgaggattattgtctgaagagggagctgctg
atgggcatctttgagatgggctgggagaagccctcccccatccaggaggagagcatcccc
atcgcgctgtcgggacgggacatcctggctcgggccaagaacgggacggggaagagcgga
gcgtatctcatcccgctgctggagaggatagacctgaagaaggaccacatacaggccatg
gtcatggtgccgacccgtgagctggcgctgcaggtgagtcagatctgcatccagatcagc
aaacacctgggcggagtcaaagtcatggcgaccaccggaggcaccaacctgcgggacgac
atcatgcgcctggacgagacggtgcacgtggtcatcgccacccctggtcggatcctggac
ctgatcaaaaagggcgtggcaaaggtggacagagtccagatgatggtgatggacgaggcc
gacaagctgctgtctcaggacttcgtggtgctcatcgaggacatcatcagcttcctggcc
aagaatcggcagatcctgctctactctgcaacgttccccatcagcgttcagaagttcatg
gtgaagcaccttcagaaaccgtacgagatcaacctgatggaggagctgaccctgaagggc
atcacgcagttctacgcctacgtgacggagcggcagaaggtccactgcctcaacacgctc
ttctccaggcttcagatcaaccagtccatcatcttctgtaactccacccagagggtggag
cttctggccaagaagatcactcagctgggctactcctgcttctacatccacgccaagatg
atgcaggaatacagaaaccgggtgtttcacgacttcaggaacgggctgtgcagaaacctc
gtgtgcaccgatctgttcacccgaggaatcgacatccaggccgtgaacgtggtcatcaac
tttgacttccctaagaacgccgagacgtacctccaccggatcggacgttcagggaggttc
ggtcacctgggcctggccatcaacctgatcacgtcggaggaccgcttcaacctgaagtcc
atcgaggagcagctggtcaccgacatcaagcccatccccggcagcatcgacaagagcctc
tacgtggccgagtaccactcggccggcggcgactgcgaggtggaggaggtggaggagaaa
ctcgagcgccacctggacagcacctaa
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