Nematolebias whitei (Rio pearlfish): 119426297
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Entry
119426297 CDS
T08042
Symbol
pan3
Name
(RefSeq) PAN2-PAN3 deadenylation complex subunit PAN3
KO
K12572
PAB-dependent poly(A)-specific ribonuclease subunit 3
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119426297 (pan3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119426297 (pan3)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119426297 (pan3)
mRNA degradation factors
3'-5' decay
Pan complex
119426297 (pan3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pan3_PK
zf-CCCH
zf-CCCH_4
zf_CCCH_4
Pkinase
Torus
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
119426297
NCBI-ProteinID:
XP_037549781
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All DBs
Position
20:29844870..29871363
Genome browser
AA seq
787 aa
AA seq
DB search
MNSGLPPSAAPLGGAGIPCVKVKFCRYYAKDKTCFYGDECQFLHEDPSMGSLSLHGGGGS
PVPLPAAGYSLGGTAVTACPGGGGTGVSKKNETLGPAGTSLEGQLLTIPGMEGPSLSDAN
LTNSYFSSSFIGVNGFGSPAESKYSMMQRMTTSSSSPSLLNDGAKNFSHSAHDPVNSPTA
SLFSDFGALSISQRRKAPNPTASEFIPKGAPRMAAMTQSAVQSFPSPLFAHPGLGSSTAA
ALAPGMSLSAGSSPLHSPKITPHTSPAPRRRSHTPNPANYMVPTTASDQGGHIIQKETVG
GTTYFYTDNTPVPMAGMVFPTFHLYPPTAPHVAYMQPKANAPSFFMADELRQELINRHLI
TMAQIDHAENPDVPSEVDSYHSLFPLEPLPPPNRMQKTSNFSYITSCYKAVNSKDDLPYC
LRRIHGFRLVNTKCMMLVDMWKKIQHSNAVTLREVFTTKAFGDHSLVFSYDFHSGAETMF
SRHFNDPAADSYFTKRKWGQHEPPPPRQHAGLLPESLIWAYIVQLSSALRTIHTAGLACR
VMDPSKILITGKTRLRLNCVGVFDVLTFDNSQTNHLALMPQYQQADLVSLGKVVLALACN
SLAGIQRENLQKAMELVSINYSSDLKNLILYLLTDQSRLRSVNDIMPMIGARFYTQLDAS
QMRNDVIEEDLAKEVQNGRLFRLLAKLGTINERPEFQKDPAWSETGDRYLLKLFRDHLFH
QVSEAGAPWIDLSHIVSCLNKLDAGVPEKISLVSRDEKSVLVVTYSDLKRCFDSTFQELQ
AAAAGSL
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtggactcccaccttcagctgctccgctcgggggtgccgggataccctgtgtc
aaggtgaagttttgccggtactacgcgaaagacaaaacctgcttttacggagatgaatgc
cagttcctgcacgaagatccgtccatgggaagcctctcgctgcacggcggcggcggcagt
ccagtcccgttacccgcagcagggtactccctcggtggtacggcggtgacggcttgcccc
ggcggtggagggaccggtgtgtccaagaagaacgaaacactggggcccgcgggcacatct
ctggaggggcagctactaaccatcccaggaatggagggtccaagcctgagcgatgccaat
cttaccaactcttacttcagcagcagctttattggggtcaatgggttcggaagcccagca
gagtcaaaatattcaatgatgcagcgaatgaccaccagcagcagctctcccagtcttctc
aatgatggtgccaagaacttcagccacagcgctcatgatccagtgaactccccgacagct
tcactgttcagcgattttggtgctcttagcatttctcaaagaagaaaggctccaaacccg
acagcaagcgagtttatccccaagggagctcctcgaatggccgccatgacgcagtctgct
gtccagtccttcccctctcctctctttgctcatcctggcctcgggagctccacagctgct
gctctggctccaggcatgtcactttctgctggatcatcccctcttcactctccaaaaatt
acacctcacacctcccctgcccctcgtcggcgcagccacactccaaaccctgccaactac
atggtgcccaccacagcgtcggaccagggcggacacattatccagaaagagactgttgga
ggaacaacctacttctataccgacaacaccccagttccaatggctgggatggtgtttcct
acctttcacctgtacccccccactgctcctcatgtggcttacatgcagccaaaagccaat
gccccgtccttttttatggctgacgagctccgacaggagttaattaacagacatctgata
accatggcccaaattgaccacgcagagaacccagatgtaccatctgaggtggacagctac
cacagcctgttccctcttgaacctcttcctccacccaaccgcatgcagaagaccagcaac
ttcagctacatcacctcctgctacaaggcggtcaacagcaaggatgacctgccctactgc
ctgaggaggatacacggatttcgccttgtaaacacaaagtgcatgatgctggtggacatg
tggaagaagattcagcactcaaatgcggtaacgcttagggaggtcttcaccactaaggcc
tttggagaccactcgttggtcttctcttatgacttccattcaggtgcagaaacaatgttc
agcagacattttaatgacccagcagcagactcgtactttaccaaaaggaagtggggtcaa
cacgaacctccgccgccgcggcagcatgcaggtctgctgccggagtctctgatctgggcc
tacatcgtgcagctcagctcggccctgcgcaccatccacactgccggtttggcgtgccgg
gtcatggaccccagcaagattctcatcaccggcaagaccaggctacgattaaactgtgtc
ggcgtgttcgatgtcttaacgtttgacaacagtcaaaccaatcatcttgccctcatgcca
cagtaccagcaagcagatctagtgtcgctgggcaaggttgtgctggctttggcgtgtaat
tcactcgctggaattcaaagggagaacctgcagaaggccatggagctggtgtctataaac
tactcctcagacctcaagaacctgattctgtatctgctgactgaccagtctcgcctacgc
agtgtcaatgacatcatgcccatgatcggagcccgcttctatacacagctggacgcatcg
cagatgaggaatgatgtcattgaggaagaccttgccaaggaggtacaaaatggtcgtctc
ttccgcctgctcgccaagctgggcaccatcaacgagcgtccagagtttcaaaaggacccg
gcgtggtcggagacgggcgaccgctacctgctgaagcttttccgggatcacctgttccac
caggtgtcggaagcgggggcgccctggatcgacctcagccacattgtttcctgcctcaac
aaactggacgcgggcgttcctgagaagatcagcctggtttctcgggacgagaaaagcgtc
ctggttgttacctactcggacctgaagcgctgcttcgacagcaccttccaggagctgcag
gctgctgccgccggctctctgtag
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