Nematolebias whitei (Rio pearlfish): 119426744
Help
Entry
119426744 CDS
T08042
Symbol
topbp1
Name
(RefSeq) DNA topoisomerase 2-binding protein 1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119426744 (topbp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nwh03032
]
119426744 (topbp1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119426744 (topbp1)
DNA replication proteins [BR:
nwh03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
119426744 (topbp1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
119426744 (topbp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
TopBP1_BRCT0
BRCT_2
RTT107_BRCT_5
LIG3_BRCT
BRCT_TopB1_SLF1
ECT2_BRCT0
N-SET
Motif
Other DBs
NCBI-GeneID:
119426744
NCBI-ProteinID:
XP_037550254
LinkDB
All DBs
Position
20:24164059..24181774
Genome browser
AA seq
1489 aa
AA seq
DB search
MCKRDNEAFIVKFVENEGSQSEHAVKAYEAILELQSDKYIKNIKEEDVLQMEQKDKSLFV
FSNFTSSGFLHCKKLGCRIVSPLVVLHCLQHQRCVPRAETPVYNMAMADVTISCTNLDKA
TRAEVMDLVQLMGGRVYLDLNVSVTHLIAGEVGSKKYLVAANLGKPILLPTWTKACWDRS
QDSLFRYTDLPMEDYLCPVLLGCTVCVTGLSSTERKEVQRLCEQHGAKYTGQLKMNECTH
LIVNEPTGQKFECAMKWNVYCVSLHWLFDSIEKGFCQDETRYSVAPKASKTTRPHTSTPT
NTTKREDAPSLLGLSNISVSTSIGINDTALTNATVSRMETPDPIDNLDLTACSADDVLDG
CKLYLCGLSMKKLEKLRRLVNAAGGLRFNQPSEELTHVVMGELDQELQHFLSKATHRPHV
VTVQWLLDSFSKGSLLPEEGYLHPDCLPPAAAAVPTTKHLPPKSRPSVGPLVLSPSTPRE
KTAEEDLLSQYMDDDPTVEPQPESWVPNPGSEQDSTLQDGLFSGKIFLLVGFGAEAEAQL
SMLVTEQGGKVLTGSTRVVADYAVVPLLGCSVEATVDEVVTDTWLAMCVEKECVLELPCN
PLFTPVPVREGHFPLKDCILSVSQFTGAERESLVDLAKHLGANVQDYFVRLANQKKGMLA
STHLVLRTPEGTKYEAAKKWGFPAVTMRWILESARTGKRALEEKYLVDLPASPERDEESF
IGGSQRPILPPPAPLSPEVPLLGPQSGKAITPLDLGRFQSKVFRSMLDEMKPKEDLSTPK
LNQDSRKKPLQKEPPLQLDTPSRFLSRDQLFRPSFNVKDALGALETPGGRSKPRPQVETP
LTDVINRNLKVALANSSHGNVSEMEAASASPQLKKTTEKEVPQKEAGPLSGVVVCVGKKL
SKMQSELNAVAASLGADFRWACDDRVTHYIYQGRVGDTSREYKGVKERGLHIVSQYWLQA
CAEEQRHVPESLYPFTYNPKMSLNLSQVPCSSQRPPPSTQLKDASEPKHNKSELTAAEEP
ATVSNRGVDPDETIDTTEKTDTLEMREKLQKQLQEIMSMTTGRRTSLRLARMGAGGAESG
SNTPDGSRAGRTGNRRTLEALRVSREAALDVNTEPSQSEQIVWDDPTAREERAKLADNLQ
WPGSPSQHSDPLPPAPPPTEEASSQFRDSMTDSELVEIAACEVINQQMGQKVMTPPPEEP
EGDILTPKAPSIAFPLAKPPVAPEPQVKEEKREEKQPPRFQLSSLSPQERIDYSQLIEEL
GGVVLDKQSFDPSCSHIIVGSPLRNEKYLAAMAAGKWILHRSYLEACRSVGHFIQEDEYE
WGSSSILDALPSVTSQQRRLALAAMRWRKALRGSSEQKVSVFQGAFSGWTVMLNIDQSRE
SGFRRLLQSGGAKALPSPSPSFYKEATHLFADFSRLKPGDFRVDVTEASAHGVKCLKPEY
IADYLMQETTPPMELYRLAAAPAEEDPDTPSRKRKASADASRLKKSRVN
NT seq
4470 nt
NT seq
+upstream
nt +downstream
nt
atgtgtaaaagagacaacgaagcgtttattgtgaaatttgtggaaaatgaaggatcacaa
tcggagcatgctgtcaaagcatatgaggctattttggagctgcagtctgataagtatata
aaaaacatcaaagaagaagatgtgttacagatggagcagaaggataagtctctgtttgtg
ttcagcaacttcacctcttcagggttcctgcactgcaagaagcttggctgcagaatagtg
agtccactggtggtgttgcactgcctccaacatcagcggtgtgtccccagagcagagacg
cctgtgtataatatggcaatggctgatgtaactatttcctgtactaatctggacaaagca
acacgggcagaagtgatggatctggtgcagctcatgggtggacgtgtctatctggatctt
aatgtgtctgtgacacacctgattgcaggagaagtaggaagcaaaaaataccttgtggct
gccaacttaggtaaacccatcctgctgcccacatggaccaaagcctgctgggatagatca
caagacagtcttttcagatatacagacttgccaatggaggactatctgtgccccgtgttg
cttggctgtactgtttgcgtgacgggcctctccagcacagaacgcaaagaggtgcagaga
ctctgtgagcagcatggagccaaatacacaggccagctcaaaatgaacgagtgcacacat
ctcattgtcaatgaaccaacaggccagaagttcgagtgtgccatgaagtggaatgtgtat
tgtgtgtctctacactggctttttgacagcatcgagaagggcttctgtcaggatgaaacc
aggtacagtgtggcacccaaggcatcaaaaaccactcggccgcacacttccacccctacc
aacaccaccaagagggaagatgccccatctctattgggtctgagcaacatttctgtcagc
actagcataggaataaatgacactgccctcaccaatgccaccgtaagccgtatggagacg
ccagaccccattgacaacctggatctcaccgcttgctcagcagatgatgttttagatggt
tgtaagctgtatttatgtggtctctcgatgaagaagctggagaagctgcggcgacttgtt
aacgctgcaggaggtttgcgcttcaaccagcccagtgaagaactcacgcatgttgtgatg
ggagaactggaccaggaacttcaacattttctttccaaagcaactcacaggccccacgta
gtgacggtgcagtggctgctggacagtttctccaaaggcagcctgcttccagaagaagga
tacctccaccctgactgtcttcctcctgctgcagctgctgtacccacgacaaaacatctc
ccaccaaagtctcgaccttcagtcggtccactggttctcagccccagcactcccagggag
aagacggcagaggaagatctactctcacaatacatggatgatgatcctacagtagagcca
caacctgagtcatgggtacccaacccaggatcagaacaagactcaaccctgcaggacggc
ttgttttctggcaaaatcttccttctcgtgggttttggtgctgaagctgaggcgcagctc
tcgatgctggtgacagaacaaggagggaaggtgctaacgggcagcactcgagtcgtggcc
gactacgccgtggttcctctgttgggctgctccgtggaggccacggtggacgaggtcgtc
actgatacctggctggccatgtgtgtggagaaagagtgtgttttggagctgccctgtaac
cccctgttcacccctgttcctgtgagggagggacatttccctctcaaagactgcattctc
tcagtcagccagttcaccggagcagagagggagtctttggtggatctggccaagcacctc
ggagccaatgtccaggattactttgtgcgtctggcgaatcagaagaaaggcatgttggcc
agcactcatttggtgttgcggactcctgaaggcacaaagtacgaggcggctaagaagtgg
gggtttcctgccgtcaccatgcgctggatactagagtctgctcgaacgggcaagagggca
ctggaggagaaatatctggttgaccttccagcctcaccagagagagatgaagagagcttc
atcggcggctctcagagaccgattctgcctccaccagctcctctttctcctgaagtccct
ttgcttggtccacaaagtgggaaagctatcacccccctggatttgggtcgctttcagagc
aaggtgtttcgctctatgttggatgagatgaagcccaaagaagacctcagcacccccaaa
ctaaaccaggacagcagaaagaaaccgcttcagaaggagcctcctctgcagctggacact
ccttctcgctttctgagcagagatcagctcttcaggccctcgtttaacgtcaaggatgca
cttggagctttggagactccaggtgggagatcgaagccaagaccacaagtagaaactcca
cttactgatgtcatcaacaggaacctgaaagtagctctggccaacagctcacacggtaac
gtctcagaaatggaagcagcttcagcaagcccccagctgaagaagaccacagagaaggag
gttccacaaaaggaagctggccctctgagtggagttgtggtctgtgtggggaagaaactg
agtaaaatgcagagtgagctaaatgcagtcgctgcctcacttggagctgacttcaggtgg
gcttgtgatgatagagtgacgcactacatctaccagggccgagtgggggacacctcccgc
gagtacaaaggagtgaaggagagggggctgcacatagtgtcgcagtactggctgcaagct
tgtgctgaggagcagagacacgtcccagagtccctgtacccgttcacctacaaccccaag
atgagcctaaacctgagccaggtgccctgcagctcccagaggcctccaccttcaacacaa
ctcaaagacgcctcagaaccaaagcacaacaagtctgagctcactgctgcagaggaacct
gcaaccgtcagtaacagaggggtcgatccagacgagaccattgatactacagagaaaaca
gatactctggaaatgagagaaaagctgcagaaacagttgcaggagatcatgtcgatgacg
acaggcaggcgcacttctctcagacttgcaaggatgggcgcaggcggtgccgagtccggc
tccaacacacctgacgggagccgagctggacgcaccgggaacagacgaactctagaagct
ctgagggtgtccagagaagccgctctggatgtaaacacagaaccatctcagagtgaacag
atagtctgggatgacccgacagccagggaggagagggccaagctggctgataatttacag
tggcccggcagtccgtcgcagcactcagaccctctcccccctgcaccccctcccactgaa
gaagccagctcacagtttagggactctatgactgattcagagctggtggagatagcggcc
tgtgaggttattaaccagcagatgggtcagaaggtcatgacgcccccaccagaggagcca
gaaggtgacatcctcactcctaaagctcccagcatcgcctttcctctcgccaaacctcca
gtcgcacccgagcctcaggtgaaggaggagaaaagggaagaaaagcagccgcccagattt
cagctgtcctccctcagccctcaggagcgcatcgattacagtcagctcatagaagagctc
ggtggcgtcgtcctggacaagcagtcctttgaccccagctgctcgcacatcatcgtaggg
agtccgctgcgtaacgagaagtatctggcagcgatggcggccggtaaatggatcctgcac
cgctcgtacctggaggcctgccgctcagtgggtcacttcatccaggaggatgagtacgaa
tggggcagcagctccatcctagatgctttaccctccgtcacctctcaacagagacgactg
gcattagctgccatgcgctggagaaaagctctgcggggaagctctgaacagaaggtgtct
gtttttcagggagctttcagtggatggacggtgatgctgaacatcgaccagagcagagag
tcgggcttcagacggttgctgcagtctggtggagctaaggcgctgcccagtccctccccg
tcgttttacaaagaggccacacatctgttcgcagacttcagtcggctcaaacccggagac
ttcagagtggacgtcacggaggcgagtgcacacggagtgaagtgcttaaagccagagtac
atcgcagattacctcatgcaggagacgaccccacctatggagctgtaccgtctggctgca
gctccggctgaagaagatccggacacgccgtcacgtaaacgtaaagcgtcagctgatgcc
tccaggctgaaaaagagccgggtgaactga
DBGET
integrated database retrieval system
