Nematolebias whitei (Rio pearlfish): 119426882
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Entry
119426882 CDS
T08042
Symbol
ddb1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03420
Nucleotide excision repair
nwh04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119426882 (ddb1)
09124 Replication and repair
03420 Nucleotide excision repair
119426882 (ddb1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
nwh04121
]
119426882 (ddb1)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119426882 (ddb1)
Ubiquitin system [BR:
nwh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
119426882 (ddb1)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
119426882 (ddb1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
119426882 (ddb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Beta_propel
Motif
Other DBs
NCBI-GeneID:
119426882
NCBI-ProteinID:
XP_037550398
LinkDB
All DBs
Position
2:complement(39829903..39923998)
Genome browser
AA seq
1098 aa
AA seq
DB search
MSYNYVVTAQKPTAVNACITGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
IAVMELFRPKGESKDLLFILTSKYNACILEYKQNGESIDIITRAHGNVQDRIGRPSETGI
IGIVDPECRMIGLRLYDGLFKVIPLDRDNRELKAFNIRLEELQVIDVHFLYGCQSPTVCF
IYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIPVPEPFGGAIIIGQESITYH
NGDKYLAIAPPTIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEELMDGTVALKDL
HVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVTVMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSEAGRE
TDDMLVLSFVGQTRVLMLSGEEVEETELPGFVDNQQTFYCGNVAHQQLIQITSGSVRLVL
QDSKALVSEWKEPQGKNISVAACNHTQVVLAVGRALFYLQILAGKLKQISTTEMEHEVAC
LDITPLGEGGGESLLCAVGLWTDISARVLKLPCFTPLHKEMLGGEIIPRSILMTTFEGSY
YLLCALGDGALFYFGLDLQTGVLSERKKVTLGTQPTVLRTFRSLSTSNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSEGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PSVSSSKLFPSSTSPHETSFGEEVEVHSLLVVDQHTFEVLHAHQFLPSEYALSIVSCRLG
KDPSVYFIVGTAMVYPEEAEPKQGRIIVFHYTDGKLQTVAEKEVKGAVYSMVEFNGKLLA
SINSTVRLYEWTAEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNF
EEIARDFNPNWMSAVNILDDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGVFHLGE
FVNVFCHGSLVLQNLVESSTPTQGSVLFGTVNGMIGLVTSLSESWYSLLLDLQNRLTKVI
KSVGKIEHSFWRSFHTERKTEQATGFIDGDLIESFLDLSRAKMQEVVSTLQIDDGSGMKR
EATVDEVIKIVEELTRIH
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtacaactacgtggtaactgcgcagaagcctacggcggtaaacgcatgcattaca
ggtcactttacttctgctgaagacctcaatctactcatagccaaaaacacacgtttggag
atctatgtggtcacagcggagggactgaggcctgtcaaggaggtcggcatgtacggcaaa
attgctgtcatggagcttttcagacccaagggtgagagcaaggacctgctgtttattctc
acatccaaatacaatgcctgcatccttgaatacaagcagaacggtgaaagcatcgacatc
atcacacgtgcccatggcaatgtccaggatcgtattgggcgtccatctgagacggggatt
attggaatcgttgacccagagtgtcgcatgattggtttgaggctgtacgatgggctgttc
aaggtgatcccattggaccgggacaaccgcgagctcaaggcttttaatatcaggctggag
gagctgcaggtcatcgatgttcacttcctgtacggctgccagtccccgacagtctgcttc
atctatcaggacccacaaggccgtcacgtaaagacctacgaggtttccctaagggagaaa
gagttcaacaagggcccctggaaacaggagaatgtggaagctgaagcatccatggttatc
ccagtgcccgagccatttggtggagctataatcataggacaggagtctatcacctaccac
aatggagacaagtacctggccattgcaccacccactattaagcaaagtacgattgtctgc
cacaaccgcgtagaccccaatggttcacgctacctgctgggtgacatggagggccgcctc
ttcatgctgctgctggagaaagaggagctaatggacggcaccgtggcactcaaagacctg
cacgtggagctgctcggagagacgtctattgccgagtgtttgacctacttggacaacggt
gtggtgttcgtgggctccagactgggagactcccagcttgtgaagctcaacgtggacagc
aacgagcagggctcttatgtaacggtgatggagacgttcaccaatctggggcctattgtg
gacatgtgtgtggtggacctggagaggcagggccagggccagctggtaacatgctcaggt
gcattcaaagagggctctcttcggatcattcggaacggcattgggattcacgagcacgcc
agcatcgacctaccgggaatcaaaggtttgtggccgcttcgatctgaagctggcagggag
acggatgatatgctggtactgtctttcgtgggtcagacccgagtgttgatgctgagtggt
gaggaggttgaggaaactgagctgccgggctttgtggacaaccagcaaacattttattgt
gggaacgtcgcacaccaacaacttattcaaatcacatcaggctctgtgcgcctggtgctt
caggacagcaaggcgttggtgagtgagtggaaggagccgcaggggaaaaacatcagcgtg
gctgcgtgcaaccacacacaagtagtgctcgctgtgggacgggccctgttctacctgcag
atcttagccggcaaactcaaacagatcagtaccacagagatggagcatgaggtggcctgc
ttggacatcacgcctctgggggagggcggaggcgagtcgctgctctgcgcggtgggcctg
tggactgacatctctgcgcgcgtccttaaacttccctgcttcaccccattgcacaaggaa
atgctgggcggagaaatcatccctcgctccatcctaatgaccacctttgaaggcagctac
tacctgctgtgtgccctgggagatggagcgctcttctacttcggtttagacctgcagacc
ggtgtcctcagcgagcgtaagaaagtcaccctcggcactcagcccactgtgctgagaacc
ttcagatccctctccacctcaaacgtctttgcctgctccgatcgacccaccgtcatctat
tcctccaaccacaagctggtattttccaacgtcaacctcaaggaggtcaactacatgtgt
ccgctcaactctgagggctaccccgacagtctggctctggccaacaacagcaccttgacc
atcggaaccattgatgaaatccagaaactgcacatccgcacagttccactctatgagtct
ccgagcgtgagctccagcaagctgttccccagcagcacttctccacatgagacctccttt
ggtgaggaggtggaggttcacagtctgctagttgtggatcaacacacctttgaagttctc
catgcccatcagttccttcccagcgagtatgccctcagcattgtgtcatgtcgcctgggt
aaagacccatctgtgtatttcatcgttggcactgccatggtgtacccagaagaggcagag
cccaagcagggacggattattgtcttccattacactgacggtaagctgcaaaccgtggct
gagaaagaggtgaaaggagccgtctattcaatggtggagttcaatgggaaactgctggcc
agcatcaatagcacagttcgtttatatgagtggacggctgagaaggagctgaggactgag
tgcaaccactacaacaacatcatggccctttacctgaagaccaaaggagatttcatcctg
gtgggagacctgatgaggtctgtcctgctgctggcgtacaaacccatggagggcaacttt
gaagagattgctcgtgattttaatcccaactggatgagtgctgtgaacattcttgacgat
gacaacttcctgggggcagaaaacgcctttaacctgttcgtctgccaaaaggacagcgcg
gccaccaccgatgaggagaggcagcacctgcaggaggtgggggtgttccacctcggcgag
tttgtaaatgttttctgccacggctcgctggtgctgcagaacctcgtggagagctctacg
cccacccaagggtccgtgctcttcggcaccgttaacgggatgatcggtctggtgacgtcc
ctgtctgagagctggtacagcctcctgctcgacctacagaaccgcctcaccaaggtcatc
aagagcgtggggaagatcgagcacagcttctggaggtccttccacacggagcgtaaaaca
gagcaggcgacaggattcatcgatggggacctgattgaaagcttcttggatctgagccga
gcaaagatgcaggaggtcgtcagcactctgcagatcgatgatggcagcggcatgaagcgt
gaagccacagtggacgaggtgattaagattgtggaggagctgacgaggatccactag
DBGET
integrated database retrieval system
