Nematolebias whitei (Rio pearlfish): 119427247
Help
Entry
119427247 CDS
T08042
Name
(RefSeq) afadin
KO
K05702
afadin
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04517
IgSF CAM signaling
nwh04520
Adherens junction
nwh04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
119427247
09140 Cellular Processes
09144 Cellular community - eukaryotes
04520 Adherens junction
119427247
04530 Tight junction
119427247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DIL
PDZ
RA
RA_2
PDZ_6
PDZ_2
RASSF8-10_RA
Motif
Other DBs
NCBI-GeneID:
119427247
NCBI-ProteinID:
XP_037550755
LinkDB
All DBs
Position
21:complement(32646794..32672770)
Genome browser
AA seq
1194 aa
AA seq
DB search
MTCPRLLAASTSSRPSQNSEDLKMSEEREKLSKVIRQWNSSRLDLFEISQPDENLEFHGV
IRFYFEDPLKGNVATKCLRVSSNAPSREIVETLSEKFRPDLKMLSTGFSLHEIHSTEERK
LNQDEKPLIVQLNWKSDSREGHFVLKKDGDTLEENRHETEKGGVLQTFKRTLSRKGKKET
STMTDENRTQEQDLKPSQTLQEKQPELPVRLQISDNAEEAFLSAVINYTNSTTVHFKLSP
AYILYAAGRFVLRCHDSRGSPSTGNVHPVTSITNKMVAMTRSVIQRQQTIVGALTFWMSN
SSELLNFLQHDEDLSPLTQQSQLDLTHLVHRAYSLLLQCLQNELRKHLPTFLTDPEQHAA
PPPETVLNTLTNAMSLLRRCRVNPALTIQLFSQLFHFISAWLFNQLVHPDAKSPGLRSHY
WGCVLQQRLAPIEAWAERQGLELAADCHLGHIVQATTLLTINKFSLWDAENIQSACFKLN
SLQVWVLLDGYLCATNEPHIPPELIDAVVGAAEASADVLIQSEGRDVRLEESLDLHLPFL
LPEGGYSCDTMRGVPPGFQEFLEQICQKGLCSLTPQLKSKGDWTACFRELSQAEGDTCVE
VSRQPEVETVTLHKPLNGGMGISIVAAKGAGQENVGIYVKSIVRGGAAEMSGRLAAGDQL
LSVDAQSLVGLSQERAAAILMQTGPIVTLQVAKFGASYHGLGALLNGPPSDSAGQNLRKH
QGGEDHPKGASTLDGVVDRCPSGWLLRGSRRQKEQRNRQLYCSDPNMAADFDLQLGSEPD
DPDDQRNLVSSVSSMNLCTDTFHREYLTLPNPKSRDRVVSELSRPQQTLKMSRSPSDGPS
SSSRTLMRQARSQDNLSVDRGGHLLDKRHNSPARKDRAPSFPIRSSVSTDDVLSRRSSPS
KRGSHRSPAGVWRTPFSQQSTPAPSVQPMRIDIPLTRAASAQSNPPLSTFQLSSSLVQKK
RNEQSRGARVHESSVPAAKKPLRPPVLWQQQRPPTSGDGAEQPRASIPPTKHVSFQEPPR
KQNTTGPVKPRDHQELRDPWRREAQEKLQEQCRLQAVELLHQEVRLLRAKDERTAEENER
LRRLNLEQQFQTRLQEVQSRGEEEEEEDEGLDMTVVLQRLGDQTSKTETTRCSEGSDRWE
QKEKPPHIKRKDGLKHEDHVTPDENLELKTKSVPAPEKLPFRERQRLFTVASSA
NT seq
3585 nt
NT seq
+upstream
nt +downstream
nt
atgacgtgtccgaggcttcttgctgcatcgacgagttccagaccgagtcagaactctgag
gacttaaagatgtcggaggaacgagagaagttatctaaagtcatccggcagtggaacagc
tccagactggacctgtttgagatcagccaacctgacgagaacctggagtttcatggcgtc
atccgtttctactttgaggatcccttgaagggaaacgtggccacaaagtgtctgcgtgtt
tccagcaacgctccaagtcgagagattgttgaaactctgtcggagaagttcaggcccgac
ctgaaaatgctgtcgacgggattttctcttcatgagatccactccactgaagagcgtaaa
ctgaaccaagatgagaaacctttgattgtccagttaaactggaagtcggacagccgagaa
ggacactttgttctgaagaaagacggggacactttggaggaaaaccgtcatgagactgaa
aaaggaggcgtccttcaaacctttaagaggacgctgtcaaggaaaggaaagaaagagacg
agcacgatgacagatgagaacaggactcaagaacaggatctgaaaccgagccagactctg
caggagaaacagcctgaattacccgtcagactccagatcagtgataatgctgaagaggcc
ttcctgtcagcagtcataaattacaccaacagcaccacagtccatttcaagctctcgcct
gcgtacatcctctacgctgcaggccggttcgttctgcgttgccacgacagccgaggctct
ccatcaacaggaaacgtgcaccctgtgacgtctatcacgaacaaaatggtggccatgacg
aggagcgttatccagagacagcagacgatcgtgggtgctctgaccttctggatgtccaac
tcctctgagctgctgaacttcctccagcacgatgaagacctgagcccgctcacacagcag
agtcagctggacctgactcacctggtgcacagagcctacagtctcctgcttcagtgtctt
cagaacgagctgaggaaacatttaccaactttcctgacagatcctgagcagcacgcagcg
ccgccaccagagacggtgctgaacaccttgacgaacgccatgtctctgcttcgccgctgt
cgggtcaaccccgctctcaccatccagctcttctctcagctcttccacttcatcagcgct
tggctttttaaccagctcgtccacccagatgccaagagtccgggcctgcgctcccattac
tggggatgtgttctgcagcagaggctggctcccatcgaagcctgggccgagaggcagggc
ctggagctggctgccgactgccacctgggccacattgtacaggctaccactcttctgacc
ataaacaagttctcgctgtgggacgccgagaacatccagagcgcctgcttcaagctgaac
tctctgcaggtgtgggtgctgttggatggctacctctgtgcaaccaatgagcctcacatc
ccccctgagttgatcgatgctgtggtcggagctgctgaggcctcggcagacgttctgatc
cagagtgagggacgggacgtccggctggaggagagtctcgacctccacctgccgttcctg
ctgccggagggggggtactcctgcgacaccatgagaggcgtccctccagggttccaagag
tttctggagcagatttgtcagaaaggtctctgcagtttgacaccgcagctaaaatccaaa
ggtgactggacggcgtgcttcagagaattatctcaagctgagggcgacacatgtgtggaa
gtcagccgacagccggaggttgagacggtgacgctgcacaaacctctgaacggcgggatg
gggatcagcatcgtagctgccaagggagcaggccaggagaacgtcggtatctacgttaaa
tctattgtcaggggaggagcagctgaaatgagtgggaggttagcagccggagatcagctg
ctcagtgtggacgctcaaagcctggttggactcagccaagaaagggcagcagccatcttg
atgcaaactggtcccattgtgaccttacaggtcgcaaagtttggagcgagctaccacggc
ctgggagcgctgctgaatggaccgccctctgacagtgcaggtcagaacctgagaaaacat
caagggggtgaagaccaccctaaaggagcctccacgctggatggtgtcgtggaccggtgt
ccctcagggtggctcctccggggcagcagaagacagaaggagcagagaaacaggcagctc
tactgctccgaccccaacatggccgcagactttgacctgcagcttggatcagaaccagat
gaccctgatgaccaaagaaacttggtgtcatcagtttccagcatgaacctttgcactgac
acatttcacagggagtacttgacgctcccaaacccgaaatccagggacagagttgtgtct
gaactgagccggccacagcaaaccctgaaaatgtctcggagtccgtcagatggaccgagc
tcctccagcagaaccctgatgcgtcaggctcgctcgcaggacaacttgagcgtggaccgt
ggaggacacctgctggacaaaagacacaactccccggcacggaaggaccgagcgccgtcg
ttcccgatacgctcgagcgtttctaccgacgacgtcctctcccgtcgcagttctccctca
aagcgtggcagccacagaagtcctgcaggtgtctggagaacgcccttctcgcagcagtcc
acacctgcgccttcagtccagccgatgcgcatcgacatccctctgacccgagcggcgagc
gcgcagtcaaaccctccgctctccaccttccagctcagctcttctctggtgcagaagaaa
aggaacgagcagagccgaggtgctcgggtccacgagagctcagtacctgcagccaagaag
cctcttcggcctccggttctgtggcagcagcaaagaccccccacgtctggagacggagca
gaacagccccgagcgagcatccctcctacgaaacacgtctccttccaagaaccgccccgc
aagcagaacaccacaggtcccgtaaagccgagagaccaccaggagctgcgtgacccctgg
aggagggaggcccaggagaaactgcaggagcagtgcaggcttcaggccgtggagctcctc
caccaggaggtgcggctgcttcgggccaaggacgagcgaacggcggaggagaacgagcga
ctccggaggctcaacctggagcagcagtttcagacgaggctgcaggaagttcaaagcaga
ggagaggaagaggaggaggaagacgagggtttggacatgacggtggtcctgcagcggctc
ggagaccaaacgtcaaaaaccgagacgaccagatgctccgagggcagcgatcgttgggag
cagaaagagaagcccccccacatcaaacgcaaagacggcctgaagcacgaagaccacgtg
acaccagatgaaaacctggagttgaagaccaagagtgtgccggctcctgaaaagcttccg
ttcagggagcgtcagcgtctcttcaccgtggcatcgagcgcataa
DBGET
integrated database retrieval system