Nematolebias whitei (Rio pearlfish): 119427372
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Entry
119427372 CDS
T08042
Symbol
ptbp1a
Name
(RefSeq) polypyrimidine tract-binding protein 1a
KO
K13218
polypyrimidine tract-binding protein 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119427372 (ptbp1a)
03041 Spliceosome [BR:
nwh03041
]
119427372 (ptbp1a)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
119427372 (ptbp1a)
Spliceosome [BR:
nwh03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
119427372 (ptbp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_8
RRM_occluded
RVT_3
Motif
Other DBs
NCBI-GeneID:
119427372
NCBI-ProteinID:
XP_037550901
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All DBs
Position
21:35097614..35113868
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AA seq
579 aa
AA seq
DB search
MDGRLDATDLYPLGSGYVPEIDSVHDISVGTKRGSDELFSSCISSGPYIMNSANGNDSKK
FKGDVRSPGAGVPSRVVHVRKLPNDINEAEVISLGLPFGKVTNLLMLKGKNQAFLELNSE
ECAQTMVSYYSSITPVIRNHPIYVQYSTHKELKTDNSPNQVRAQAALQAVNALHGGGIGS
VTISSDASSMAGAMTQSPVLRVIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNGQFQA
LIQYADAMTAQHSKLSLDGQNIYNACCTLRISFSKLTCLNVKYNNDKSRDYTRPDLPTAD
SQQSIDPQTMAAAAFTAPGIISASPFGGAHAFSPAFTIQQAAGLSMPGIPSALASLGVGH
SGMAAAAAAASRLGLSGLAAAGGHNVLLVSNLNPESVTPHCLFILFGVYGDVMRVKILFN
KKENALIQMSDGTQAQLAMSHLNGQRLHGRAMRVTLSKHTTVQLPREGHEDQGLTKDFSS
SPLHRFKKPGSKNYSNIFPPSATLHLSNIPPSVVEDDLKRLFVSSGATVKAFKFFQKDRK
MALIQMGSVEEAIECLIEFHNHDLGENHHLRVSFSKSTI
NT seq
1740 nt
NT seq
+upstream
nt +downstream
nt
atggacggccgcctagacgccactgacttgtaccctctgggatccggctacgtccctgag
atcgacagtgtccatgatatatcggttggcaccaagaggggatcagacgaactcttttct
tcctgcatatccagcggaccgtatatcatgaactcagccaatggcaacgacagcaaaaaa
ttcaaaggtgatgtccgcagtcccggtgccggtgttccatcacgtgtggttcacgtacgc
aagctgccaaacgacatcaatgaggccgaggttataagcctgggactgccttttgggaag
gtcacaaatctgctgatgctgaaagggaagaatcaggccttcttggaactgaacagtgag
gagtgtgcacagacgatggtgagctactactcctctattaccccggtcatcagaaaccat
cccatctacgtgcagtactcgactcataaggaactcaagacggacaactccccgaaccaa
gtacgtgctcaagcagctctgcaggcagtcaatgccctgcatggaggaggaataggaagt
gtgaccatctcttctgatgctagtagcatggcaggagcaatgacccaaagccctgtactc
cgagtcattgtagagaacctgttttaccccgtcacccttgatgttctacaccagatcttt
tcaaagtttggtacagtgctgaaaatcatcacgtttaccaagaacggccagtttcaggct
ctgatccagtacgccgacgccatgaccgctcagcattccaaactctctctagatggccaa
aatatctacaatgcttgctgtaccctgagaatcagcttctccaagctcacctgcctcaat
gtgaagtacaacaacgacaagagccgagactacacccgcccagatctgcccacggccgac
tcccagcagtccattgatcctcagaccatggcagctgccgcgttcactgcaccaggaata
atttcagcctcccccttcggtggagctcatgccttctccccagcttttactatccagcag
gctgcaggtctgtcgatgcctggtatccccagcgccttggcgtccctgggtgtgggtcat
tctggcatggcagctgctgcagcggcagctagtcgtctgggcctgtcggggcttgctgcg
gctggaggacacaacgtgttgctggtcagcaacctgaaccccgagagcgttacgccacac
tgcctctttattcttttcggcgtgtacggagacgtgatgagagtcaagatcttgttcaat
aaaaaggagaacgctcttatccagatgtctgatggcacacaggctcagctagccatgagc
cacttgaacggccagcgtcttcatggcagggccatgcgtgtgaccttgtccaaacacaca
acggttcagctgcccagagaaggccatgaggaccagggcctcaccaaggacttcagcagc
tcgccgctgcatcgttttaagaagcctggctccaagaactactccaacatcttcccgccc
tctgcaacgctgcacctctccaacatcccgccctcggtggtggaggatgatctgaagagg
ctgtttgtaagttcaggagccacagtcaaagccttcaagttctttcaaaaggaccggaag
atggccctcatccagatgggctccgttgaggaggccatcgagtgcctcattgagttccac
aaccacgacttgggggagaaccatcaccttcgagtgtccttctcaaagtccaccatctga
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