Nematolebias whitei (Rio pearlfish): 119427969
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Entry
119427969 CDS
T08042
Symbol
lrp6
Name
(RefSeq) low-density lipoprotein receptor-related protein 6 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04150
mTOR signaling pathway
nwh04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
119427969 (lrp6)
04150 mTOR signaling pathway
119427969 (lrp6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
nwh04131
]
119427969 (lrp6)
Membrane trafficking [BR:
nwh04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
119427969 (lrp6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
Vgb_lyase
SGL
DUF5050
EGF_LRP2
cEGF
EGF
Motif
Other DBs
NCBI-GeneID:
119427969
NCBI-ProteinID:
XP_037551538
LinkDB
All DBs
Position
22:complement(1312907..1332977)
Genome browser
AA seq
1618 aa
AA seq
DB search
MGVSLRSLLLLWTFCCLVRDEPLLLYANRRDLRIVDVEHEKANATVVVEGLEDAAAVDYV
YAQGLIYWSDVSEEAIKRTFFNQSGARVVQTVVQGLTSPDGLACDWLGRKLYWTDSESNL
IEVAELDGSLRKVLFWQELDQPRAIALDPERGFMYWTDWGEVPKIERAGMDGTNRSIIVD
KDINWPNGLTLDYEQNQLYWADAKLNFIHRANLDGSSRTVVIKGELPHPFALTLDQNTLF
WTDWTTHSIHSCRKLSGQNQRVVHSNIFSPMDIHVFSPRRQPASASTSCSQNNGGCSHLC
LLSPTGPFFRCACPTGVQLLEDGRTCRDGATQILLLARRTDLRQISLDTPDFTDIVLPVE
DIRHAIAIDYDPVEGYAYWTDDEVKAIRRSRLDGGDAQFVVTSQVSHPDGIAVDWVARNL
YWTDTGTDRIEVTRLNGTMRKILISEDLDEPRAIVLDPMAGYMFWTDWGEVPKIERANMD
GTERMVMVNTSLGWPNGLALDYNEHKIYWGDAKTDRIEVMDTDGSARRVLVEDKIPHIFG
FTLLEDHIYWTDWQRRSIERVHKRTAERDIIIDQLPDLMGLKATRVHGVHGSNPCAESGG
GCSHLCLFTPHGVRCDCPMGLELLADLRTCIVPEAFLLFSRHTDIRRISLETNNNNVAIP
LTGVKEASALDFDVTDNRIYWTDITLKTISRAFMNGSALEHVVQFGLDYPEGMAVDWLGK
NLYWADTGTNRIEVAKLDGQHRQVLVWKDLDSPRALALDPAEGYMYWTEWGGKPKIDRAA
MDGTGRVTLVADVGRANGLTIDYSERRLYWTDLDTTLIESSNMLGQDREVIADDLPHPFG
LTQFQDYIYWTDWSQRSIERANKSSGQNRTLIQGHLDYVMDILVFHSSRQGGWNVCASTH
GHCSHLCLAVPVRGFVCRCPAHFSLNADNKTCSAPTSFLLFSQKNSINRMVIDEQQSPDI
ILPVHNLKNVRAIDFDPLDKQLYWIDSKQSVIRRAQEDGNQSMTVVSSSVAGPGPGLQLY
DLSIDIYSRFIYWTSEVTNVINVTRTDGSRVGVVLRGEKDKPRAIVVNPERGYMYFTNLQ
ERSPKIERAALDGTEREVLFFSGLGKPVALAIDNEVGKLFWVDSDLRRIESSDLSGANRV
VIADTNILQPVGLTVFGNHLYWIDKQQQMIERIDKTTREGRTKVQARVAYLSDIHAVHEL
DMKDYRKHPCTKDNGDCSHICIVKGDGTTRCSCPIHLVLLPDELTCGEPPTCSPKQFTCS
SGEVDCIPNTWRCDGYVECDDSSDEEDCPVCSESEFQCDSRQCIDMSLRCNGEINCQDKS
DENECEVRCPADQFSCSNGQCIGKHKKCDHNTDCSDNSDEIGCYPTEEPQPSSNNTISSI
VGVVVALFMVGAIYFVCQRVLCPQMKDDGETVTNDFVVHGPSVPLGYVPHPNSLSSSLPG
MSRGKSVIGSLSIMAGGSSGPPYDRAHVTGASSSSSSSTKGTFFPPILNPPPSPATVRSQ
YTLEFGYSSNSPSTHRSYSYRPYTYRHFAPPTTPCSTDVCDSDYTPGRRAPLKSAAATKG
YTSDLNYDSEPFPPPPTPRSQYLSAEENCESCPPSPYTERSYSHHLYPPPPSPCTDSS
NT seq
4857 nt
NT seq
+upstream
nt +downstream
nt
atgggagtctcgctgcggagcctgttgttgttgtggactttttgttgtcttgtccgagat
gaaccgctcctcctctatgcgaaccggcgggatcttcggatcgtggacgtggagcacgag
aaggccaacgccacggtggtggtggagggcctggaggacgctgccgccgtggattacgtg
tacgctcagggcctcatctactggagcgacgtgagcgaggaggccatcaaacggaccttc
ttcaaccagtccggggcccgggtggtccagaccgtggtacagggtctgacctccccggac
gggctggcctgtgattggttagggaggaaactttactggacggactctgagagtaatctg
attgaggtggccgagctggatgggtctctgaggaaggttctgttctggcaggagctggac
cagcccagagccatcgccctggatccagaacgagggttcatgtactggacagactggggt
gaggtcccaaagatcgagcgggccgggatggacgggaccaaccggtccatcatcgtggac
aaggacatcaactggcccaacgggctgaccctggactacgaacagaaccagctgtactgg
gccgatgccaagctcaacttcatccaccgggccaacctggacggctcctccaggacggtg
gtgatcaaaggggagctgcctcaccccttcgccctcaccctggaccagaacacgctgttc
tggaccgactggaccacccactccatccactcctgcaggaagctctcgggtcagaaccag
cgggtcgtccactccaacatcttctcacccatggacatccacgtgttcagccccaggaga
cagcctgcctcagccagcacctcctgctcccagaacaacggaggctgttctcacctctgc
ctgctctcccccaccggacctttcttccgctgcgcctgtcccaccggagtccagctgctg
gaggacgggaggacctgcagagacggtgctacccagattctgctgctggcgcggcggaca
gacctgcgtcagatctctctggacacgccggacttcacggacatcgtgctgccggtggag
gacatccggcacgccatcgccatcgactacgacccggtggagggctacgcctactggacc
gacgacgaggtgaaggccatccgccgctcccgcctggacggaggcgacgcccagttcgtg
gtcacgtctcaggtgagccaccccgacggtatcgccgtcgattgggtcgcccgaaacctc
tactggaccgacactgggacggaccgcatcgaggtgacccgactcaacggcaccatgagg
aagattctgatctccgaggacctggacgaacccagagccattgttctggatcccatggct
gggtacatgttctggaccgactggggcgaggtgccgaaaatcgagcgggccaatatggac
gggacggagcggatggtgatggtgaacacgtctctgggctggcccaacgggctcgcgctc
gactacaacgaacacaaaatctactggggagacgccaagacggaccgaatcgaggtgatg
gacacggacgggtctgctcgacgggttctggtggaggacaagattcctcacatcttcggc
ttcaccctgcttgaagaccacatctactggacggactggcagcgccgcagcatcgagcgg
gtccacaaacgcaccgccgagagggacattatcatcgaccagctgcccgacctcatgggc
ctgaaggccacacgggtccacggagtccacggttcgaacccatgtgccgagtctggcggc
ggctgcagccacctgtgcctgttcacgcctcacggcgtgcgctgcgactgccccatgggt
ctggagctcctggccgacctgcggacctgcattgtccccgaggccttcctgctcttttcc
cgccacaccgacatccgccggatctccctggagaccaacaacaacaacgtggccatcccg
ctcaccggcgtcaaggaggcgtcggcgctcgatttcgacgtcaccgacaaccgtatctac
tggaccgacatcaccctcaagaccatcagccgggccttcatgaacggcagtgctctggaa
cacgtggtccagtttggacttgactatccagaggggatggcggtggactggctggggaag
aacctgtactgggccgacaccggcaccaaccgcattgaagtggccaaactggacgggcag
caccggcaggttctggtctggaaagatctggacagcccccgagctctggctctggatcct
gctgaggggtacatgtactggaccgagtggggagggaaaccaaagatagaccgggccgcg
atggacggaacgggccgcgtcacgctggtggccgacgtgggccgggccaacggactcacc
atcgactactcggagcggcggctctactggaccgacctggacacgaccctgatcgagtcg
tccaacatgctcggtcaggaccgggaggtgatcgctgacgaccttcctcacccgtttggt
ctgacccagttccaggactacatctactggacagactggagccagcgcagcatcgagcgg
gccaacaagagcagcggtcagaaccgcaccctgatccagggccacctggactacgtcatg
gacatcctggtgttccactcgtcccgacaggggggctggaacgtgtgcgcctccacccac
ggtcattgctcccacctgtgcctcgccgtccccgtcagaggcttcgtctgccgatgcccc
gcccacttctccctgaacgccgacaacaagacctgcagcgctcccacctcgttcctgctc
ttcagccagaagaactccatcaaccggatggtgatcgacgagcagcagagccccgacatc
atcctgccggtccacaacctgaagaacgtccgggccatcgacttcgacccgctcgacaag
cagctctactggatcgactccaagcagagcgtcatccgccgcgcccaggaggacgggaac
cagagcatgacggtggtgtcgagttctgtggccgggcccggtccgggtctgcagctgtac
gacctgagcatcgacatctacagccgcttcatctactggaccagcgaggtgaccaacgtc
atcaacgtgacccggacggacggcagcagggtgggcgtggtcctgcggggcgagaaggac
aaacctcgagccatcgtggtcaaccccgagcgcgggtacatgtacttcaccaacctgcag
gaacgctcgccgaagatcgagcgagcagcgctggacggaacggagcgcgaggtcctgttc
ttcagcgggttggggaaacccgtggctctggccatcgacaacgaggtcgggaagctgttc
tgggtcgactcggatctgcgacgcatcgagagcagcgacctgtccggagccaatcgggtc
gtgattgctgacacgaacatcctgcagcccgtgggcctgacggtgttcgggaaccacctg
tactggatcgacaagcagcagcagatgatcgagcgcatcgacaagacgacgagggagggc
cgcactaaggtgcaggcgcgagtggcctacctgagcgacatccacgctgtgcacgagctc
gacatgaaggattaccgtaaacacccgtgtacgaaagataacggtgactgctcccacatc
tgcatcgttaaaggagacgggacgactcgctgctcatgtcccatccacctggtgctgctg
ccggacgagctcacctgcggagaaccacccacctgttcacccaagcagttcacctgcagt
tccggggaggtggactgcatcccaaacacctggaggtgcgacggttatgtggaatgtgac
gacagcagcgacgaggaggactgtccggtctgttcagagtcagagttccagtgtgacagt
cggcagtgcatcgacatgagcctccgctgcaatggagagatcaactgtcaggacaagtct
gacgagaacgagtgcgaagtgcggtgtccggcagatcagttctcctgctccaatggtcag
tgtatcggcaaacacaagaagtgcgaccacaacacggactgcagcgacaactccgatgag
atcggctgctatccgacggaggagccgcagccctcgtccaacaacaccatcagctccatc
gtcggcgtggttgtagcgttgttcatggtgggtgccatctactttgtgtgtcagcgcgtc
ctctgtcctcagatgaaggacgacggcgagaccgtcaccaatgactttgtggttcacggg
ccgtctgtaccactgggatacgtgccacacccgaactcgctgtccagctcgctgccaggt
atgtccagagggaagtctgtgattggctctctgagcatcatggctggtggcagcagtggc
ccgccgtacgaccgcgctcacgtcaccggagcctcgtccagcagctcttccagcactaag
ggaaccttcttccccccgatcctgaacccacccccatctcctgccacggtacgatcccag
tacaccctggagttcggttactcctccaacagtccgtccactcaccgctcctacagctac
cggccgtacacataccgccactttgccccgcccaccacaccctgcagcactgacgtttgt
gacagcgactacactccgggacgtcgagcaccactgaagtctgctgcggccaccaagggc
tacaccagcgacttgaactatgactctgagccgttcccgccgccaccgacgccccgcagc
cagtacctgtcggcggaggagaactgcgagagctgcccgccgtcgccgtacacagagcgc
agctactcccaccacctctacccaccgccgccctcaccctgcacagactcctcgtga
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