Nematolebias whitei (Rio pearlfish): 119428076
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Entry
119428076 CDS
T08042
Symbol
lamb1b
Name
(RefSeq) LOW QUALITY PROTEIN: laminin subunit beta-1b
KO
K05636
laminin, beta 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119428076 (lamb1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119428076 (lamb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
LAMININ_IV_B
Laminin_N
EGF_LMN_ATRN
Alanine_zipper
LAMB1
F5_F8_type_C
Synaptobrevin
Motif
Other DBs
NCBI-GeneID:
119428076
NCBI-ProteinID:
XP_037551647
LinkDB
All DBs
Position
22:complement(19129249..19158873)
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AA seq
1829 aa
AA seq
DB search
MLCLSADSGVELVGCEFFXSRQLPSCCTFHKLINGPSAEGTSWTEAVNALLWKMLFMSFT
LTALALWSPVWTQEPEFADVCTEGSCYPATGDLLIGRAHKLDASSTCGLHQPEQFCIVGH
LEEETKCFMCDSRDTYDDANPVSHAVENVVTTFAPNRLKTWWQSENGVENVTIQLDLEAE
FHFTHLIMTFKTFRPAAMMIERSMDYGKTWQVYRYFAYDCRSVFPSISTGPMARVDEIIC
DSRYSDIEPSTEGEVIFRVLDPAFEIEDPYSLRIQNMLKITNLRVKFIKLHTLGDNLLDS
RDEVTEKYYYALYDMVVRGNCFCYGHASECAPIDGQPSTAEGMVHGRCVCNHNTQGLNCE
RCQDFYHDLPWRPAEGRNSHACKKCECNHHSTSCHFDHAVYVLTGEVSGGVCDDCQHNTV
GRQCEQCARFFYQHPHRNLRDSNICEPCNCDPDGSLQGGLCDSHTDVAAGLISGQCRCKA
NVEGERCDHCRQGYHGLGEIPDGCLPCTCNLLGTVPGANTCDSDTGQCFCKRLVSGHNCD
QCLPEHWGLSNDMDGCRPCNCDQGGAVNNNCDPHSGQCMCLEHMFGRRCNQVESGFYFSS
LDHYTYEAEDAKHGPGVTLVHRPYPQERSPTWTGMGFANVPEEGFLEFTINNLPVSMDYD
ILIRYEPQLPQQWEHVNVGVERPVFYPPSYSSHCSSSDQSGDEQYTSLPPGSRHVLLVTP
VCFEKGLNYTIRLSFPFYSSISSVQSPYTLIDSLVLMPRVGQLDMFHGPEGEKAWDTFQR
YRCLENSRSIIKSPMTDICDDYIFSVSALLHGGAMACQCDPHGSLSTVCDSSGGQCRCRP
NVVGRNCDHCAPATFLFSPAGCRPCDCDSLGSISPFCHEATGHCECVPGAMGRQCSHCLP
GFWGFPQCRPCHCNGHSEHCHSQTGECQGCRDFTTGHHCERCLNGYHGDPELGSGDHCRP
CMCPDGPRSGRQFAESCYLLTSQLVCVCSHGYKGARCDECAPGYYGNPLIPGGRCMPCQC
NNNIDMHDPRSCDARTGACLKCLYHTQGHACQHCKVGYYGNATTQSCRKCTCYSAGTIPQ
ACSSPDDCECDQRTGQCPCQPNVVGPSCNHCAPDTWNIDSGSGCQLCDCDLVHSYGSSCH
EVTGQCVCKPGFGGRTCRECKELFWGDPEVKCQACQCDPRGISSEQCDRATGQCTCVEGV
SGRQCNECARGYLGDFPLCEPCHKCFDVWDPVVSELTDQTRRLEAQVTELLTNGVTEPYK
ELVSSLERNAKAVKEIIANRTASVKLEQIQDLTHQITGLMSYFNGKLNTTEDILNFLHGD
VNVTDTRLDELTDEANKLEQNVQELKQQVHDAKNSNIYGAISTVSTAHSESRMAEQRSNA
STSDPGNTVEQSAAVRKTTEEKLISSQKEFDRKHQQNEQKLDRLSKELDTFDLSPLSEKM
CGSAAEGEDCPPCGGLGCVREDGAPQCGGEGCSGLVTVSKTVLKSAQNLDQKIQEAMQDV
DKLSRMVWDANIRANEAKAKAMEVMIKANHSKERVEESNNQLRNLFKEIRDLLSNDKVDA
DVIEAVANEVLALEMPKSAEKLQELTNEIREKVSSLTSVETILSQSAEDIVAAELLLTQA
KAASEEASNIKETAEAVKAALDETERAQSTALDAVRLAQSNIEGTRTLLNSVESETSKSE
LKLSNTTGQLVQLEREVSLLRQNILEMNQQVEKTERITEQARQNAEAAQQDFDDKVKDQF
EEVEVQVADKGESVLQARKRADELQQEATELLEQSSIKLQRLEELEHSYEANQAILENKA
VDLAELEETARRILDEISRKVTQYISCQY
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgttgtgcctctctgctgacagtggggtggagttggtgggatgtgaattttttnnttca
agacaactcccttcatgctgtacttttcacaaactcatcaacggtccgtctgcggaggga
acatcttggactgaagctgtaaatgctcttctctggaagatgctgttcatgagcttcact
ttaacagctttggccctgtggagtcccgtttggacacaggagccagagtttgcagatgtg
tgcacagagggcagctgttaccccgccacaggtgacctgctgatcggccgggcgcacaaa
ctcgacgcctcctccacctgcggcctccatcagccggagcaattctgcatcgtgggacac
ctggaggaggagaccaagtgtttcatgtgcgactccagagacacgtacgatgatgcgaac
cccgtcagccacgccgtcgagaacgtggtcaccaccttcgcccccaaccgcctcaagacc
tggtggcagtcggagaacggtgtggagaacgtgaccatccagctggacctggaggccgag
tttcatttcacacacctcatcatgacctttaagacgtttcgcccggcggccatgatgatc
gagcgttcaatggattatgggaaaacgtggcaggtttaccgttactttgcctacgactgc
cggtcggtgttccccagcatctccacgggccccatggcgagagtagacgagatcatctgt
gactcccgctactccgacatcgagccgtccacagagggagaggtgatatttcgagtgctg
gaccctgcctttgagatcgaagacccctacagtttgagaatacaaaacatgctgaagatc
actaacctccgagtgaagttcatcaagctccacacgctgggcgacaacctgctcgactcg
cgggacgaggtgacggagaagtactactacgccctctacgacatggttgtccgtgggaac
tgcttctgctacggccacgcctccgagtgcgcgcccatcgacgggcaaccgtccacagct
gaaggcatggttcatggccgctgtgtgtgcaaccacaacactcagggactgaactgtgag
cgctgtcaggacttttatcacgatttgccctggagacctgcagagggacgaaacagccac
gcttgcaagaagtgtgagtgcaatcatcactccacatcgtgccactttgaccacgccgtg
tacgttttgaccggcgaggtgagcggaggcgtgtgcgacgactgtcagcacaacaccgtg
ggccgacagtgcgagcagtgcgcacgtttcttctaccagcacccccacaggaacctgaga
gactccaacatctgcgaaccttgtaactgtgatccggacggatctctgcagggcggactg
tgtgactcacacacagatgtggctgcagggctgatctcaggtcagtgccggtgcaaagcc
aacgttgagggagaacgctgtgatcactgcagacagggataccatggactgggagaaatc
cctgatggctgcctgccttgtacctgtaacctgctgggaactgtgccaggagcaaacacc
tgcgattcagacacagggcaatgcttttgcaaacgacttgtcagtggacacaactgtgat
cagtgtctgccggagcactggggtctgtccaacgacatggacggttgcagaccctgcaac
tgtgaccaaggaggtgctgtcaacaacaactgtgaccctcactcaggccagtgtatgtgc
ctggagcatatgtttggacgccgctgcaatcaggtcgagtccggcttctacttcagctct
ctggatcactatacgtatgaagcagaggatgccaagcacggtcctggcgtcacattagta
catcgaccttaccctcaggagagaagccccacatggactgggatgggctttgctaatgtc
cctgaggaagggtttttagagtttaccatcaacaacctcccagtgtcaatggactatgac
atccttatacgctatgagccacagctgccgcagcagtgggagcacgtgaacgttggagtg
gagcgtccagtcttctaccctccaagctactccagtcactgcagcagctctgaccagagc
ggagacgagcagtacacctctctgccacctggatccaggcatgtgctgctggtgaccccg
gtgtgtttcgagaaaggactgaactacacgatccgtctttctttcccattttactcatcc
atcagcagcgtccagagtccatacactctcatcgactccttggtgttgatgcctcgagtc
ggacagctggacatgtttcatgggccagagggtgaaaaagcgtgggatactttccagcgc
tacagatgtctggaaaacagccggagcatcatcaaaagtcccatgacggacatctgcgat
gattacatcttcagtgtgtctgctctgcttcacggaggagctatggcatgccagtgtgac
cctcacggctcgctcagcaccgtttgcgactcgagtggcggtcagtgccggtgccgaccc
aacgtggttggcaggaactgtgaccattgtgctccagctactttcctgttcagccctgcc
ggctgcagaccttgtgactgtgactctctgggctccatcagccccttctgccacgaggca
accggacattgtgagtgtgtcccgggagccatgggtcgtcagtgctcccactgcctgcca
ggtttttggggcttccctcagtgtcgaccatgtcactgtaatgggcacagcgagcactgc
cactctcagactggagagtgtcagggctgcagggacttcactacgggacatcactgtgag
aggtgtttgaatggttaccatggtgacccagaactgggttcaggagaccactgtcgtccc
tgcatgtgtccggacgggccgcgcagtggtcggcagtttgcagagagctgttacctctta
accagccagctggtgtgtgtgtgcagccacggctacaaaggagccagatgtgacgagtgc
gcccccggttactatggaaaccctctgattccaggagggagatgcatgccctgtcagtgc
aacaacaacattgacatgcacgacccccggtcgtgtgacgctcgcacaggtgcctgtctc
aaatgcctgtaccacacgcagggacacgcgtgtcagcactgcaaagtcggttactacggc
aacgccaccacacagagctgcaggaagtgcacgtgttactcagcggggacgatacctcag
gcctgttcgtcccctgatgactgcgagtgtgatcagcgtactggacagtgtccctgtcag
cccaacgtggtcggcccgagctgtaaccactgtgctcctgatacgtggaacatcgacagc
gggtcgggctgccagctctgcgactgcgacctcgtccactcttacggatcctcctgccat
gaggttacaggacagtgcgtgtgcaaaccaggatttggtggcaggacgtgtcgggagtgc
aaagagcttttctggggagatccagaggtcaaatgtcaagcttgtcagtgtgacccgcgg
ggaatctccagtgagcagtgtgaccgagccacaggtcagtgtacctgtgtggagggtgtt
tcaggaagacagtgcaacgaatgtgccaggggctacctgggtgacttccccctctgtgaa
ccatgtcacaagtgtttcgatgtgtgggacccggtggttagcgagctgacagatcaaact
cgacgcctggaggcccaagtgacggagctgctgaccaatggggtgacggagccgtacaaa
gagttggtcagcagcttggagagaaacgccaaggctgtgaaagagataatagcgaacagg
accgcctcagtgaaactggaacagattcaggatctgacgcatcagatcactggtttgatg
tcttatttcaacggaaagttaaatacgaccgaggatatcttgaactttctccacggtgac
gtcaacgtcacggacacaagacttgatgaactgactgatgaggccaacaagctggagcaa
aacgttcaagagctgaagcagcaggtccacgacgccaagaactccaacatctacggagcc
attagcactgtttctacagcgcactcagagtccagaatggcagagcagcgctccaatgct
tcaaccagcgatcctggcaacacggtggagcagtcggccgcagtaaggaaaaccacagag
gaaaaactgatcagcagtcagaaagaatttgatcggaaacaccaacaaaacgaacagaag
ctggacagactgtccaaagagctggatacatttgacctgtcccctcttagtgagaagatg
tgtggaagtgcagctgaaggtgaagactgccccccctgcggtggactgggttgtgtcagg
gaggatggagcgcctcagtgtggaggagagggttgcagcggtctggtcaccgtttctaaa
actgttctcaaatcagcccagaacctggaccagaagatccaagaggccatgcaggatgtg
gacaagctctccaggatggtgtgggatgccaacatccgtgcaaatgaggcgaaggccaaa
gccatggaggtgatgatcaaagccaaccacagcaaagagagagtcgaagagagcaacaat
cagctccgcaacctcttcaaggagatacgagaccttctgtccaacgacaaggtcgacgcg
gatgtgatcgaggcggtggccaacgaggtgctggctctggagatgccaaagtcggcagaa
aaactgcaggagctgacaaacgagatccgagagaaggtcagctctctgaccagcgtggag
acgatcctcagccagagcgccgaggacatcgtggctgcggagctgctgctgacgcaggcc
aaggctgccagtgaggaggcgtcaaacataaaagagacagcggaggcggtgaaggctgcc
ctggatgagactgagcgcgctcagagcaccgccttggacgccgtccgactggctcagtcc
aacattgaaggaactcggaccctgctgaactctgttgagtcggagacgtccaagtcggag
ctgaagctcagtaacaccacgggtcagctggtgcagctggagcgagaggtcagcctgctg
aggcagaacatcctggagatgaaccagcaggtggaaaagactgagcggatcacggaacag
gccagacagaacgccgaggcggcgcagcaggactttgacgataaggtgaaagatcagttt
gaggaggtggaggtgcaagtggcagataaaggggagtcggtgttgcaggcaagaaagaga
gcagatgaactgcagcaggaagccacagagctgctggagcagagcagcattaagctgcag
agactcgaagagttggagcactcctacgaggccaaccaggccatcctggagaacaaagct
gtagatctggctgagctggaggaaaccgctcgccgcatcctggacgagatcagccgcaaa
gtgactcagtacatctcctgtcagtattaa
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integrated database retrieval system
