Nematolebias whitei (Rio pearlfish): 119428894
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Entry
119428894 CDS
T08042
Name
(RefSeq) collagen alpha-1(VIII) chain-like
KO
K23455
collagen type VIII alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
C1q
BclA_C
Motif
Other DBs
NCBI-GeneID:
119428894
NCBI-ProteinID:
XP_037552516
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Position
23:complement(17717030..17721806)
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AA seq
734 aa
AA seq
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MVAVPSHSFHHVILLFQLCLLHMVHGGAYYGQKQPPQQHQPIPQYDGFQQQQFLGNEMPL
LPQNGNEFPQLPLQMAKQRLLTKGKGQTFPRGAKGPPLPFPDGQGFPEGPQGIQGPPGPT
GPPGPQGPSGPPGQGMPGLPGTPGPPGPLGYRGVGKPGMPGLPGKPGGPGLPGPKGDLGP
VGEDGPPGLIGQPGLPGPTGLPGRSKPGGQGLPGLPGHSGEPGQNGPPGFPGPSGPKGEQ
GLGIPGFPGLKGPSGPPGPPGQVGLPGNGKPGSNGLPGQPGIPGKPGPPGEPGFAGQPGE
RGQAGLPGMPGIGKPGNDGFRGQQGLPGGKGEIGSPGLTGPPGLPGYGKTGFPGPKGHKG
QAGPPGPSGSKGEKGQVGLPGVNGPTGLNGMPGAPGLMGLPGDFGFPGLKGEGGDGGPRG
NPGTKGDRGPSGLPGQPGSLGDSGQPGPRGVQGPIGPKGDTGFRGLPGAPGAAGLPGPKG
EGGEPGDKGHPGPQGIPGLTGPGGPIGPPGLPGHKGEAGPVGNPGYPGKGNPGPPGQIGP
QGSPGVGGPPGLPGRPGPPGPPGPPGLSTSYPDLGQILPHSGPYESQSNEKLKNGGEISG
ATLKMPAFTAKLTNPFPLVGSPIIFDKLLHNGNQDYNSQTGIFTCSLPGIYYFAYHVHCK
GSNVWVALMKNNEPVMYTYDEYKKGLLDQASGSAVLPLQRGDTVYVQLPSDQAAGLYAGQ
YVHSTFSGYLLYSM
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atggtggctgtaccttcccactctttccatcatgtcatcttactgttccagttgtgtttg
ttacacatggttcacggcggagcatattacggacagaaacagcctccgcagcagcaccaa
cccattccacagtacgacgggtttcaacagcagcagtttctgggaaatgaaatgccattg
ctacctcagaatggaaatgagtttcctcagctgcctttgcaaatggcaaaacaaaggcta
ctgacgaagggcaaagggcaaacttttccaagaggagccaagggtccacctttacctttt
cctgatggacaaggttttccagaaggaccacaaggaattcagggcccccctggaccaact
gggccaccaggtccacagggcccttctgggccaccaggtcagggaatgccgggtttgcca
ggaacgccagggccccctggtcctctgggctacagaggagttggaaaacctggtatgccg
gggttgcctggaaagcctggaggccccggactaccaggtccaaaaggtgaccttggacca
gtgggtgaagatgggccacctggacttattgggcaaccaggactcccaggtcccactgga
ctccctggaagatcaaaaccaggaggtcagggtctgccgggacttccaggccattctggt
gagcctggtcaaaacggcccacctgggttccctggtccatctggcccaaaaggagaacaa
ggacttggtatacctggttttccaggtttgaaaggacctagtggcccacctggcccacct
ggacaagtaggtcttcctggcaatggtaaacctggctctaatggtctacctggacaacct
ggaataccagggaaaccaggtcctcctggagaacctgggtttgcaggacaacctggtgaa
agaggccaagcaggacttccagggatgccaggaattgggaaaccaggaaacgatgggttt
agaggtcaacaaggccttccaggaggaaaaggtgaaattgggtctcctggtttaactgga
ccccctggtttacctggttatggtaaaacaggatttccaggaccaaagggtcacaaggga
caagctggacctccaggaccatcaggctcaaaaggggaaaagggtcaagtagggcttcca
ggggtaaatggtccaactgggcttaatggaatgcctggtgcaccaggcttaatgggactt
cctggtgattttggcttcccaggactaaaaggagagggtggtgatggaggtccaagagga
aatcctggaacaaagggcgataggggaccttcaggtcttccaggacaacctggtagttta
ggagacagtggacaacctggaccaagaggtgtacaagggcccattggccctaaaggagac
actggttttagaggtttacctggtgcccctggtgctgcaggattaccaggaccaaaagga
gagggaggagaacctggagacaaaggtcacccaggaccacagggtattcctggacttaca
ggaccagggggaccaattggacctcctggtctgccaggacataaaggtgaagcaggtcca
gtaggtaaccctggttatcctgggaagggaaaccctggaccccctggtcaaattggtcct
caaggtagccctggtgtcggtggcccccctggacttccaggacgaccaggaccaccaggg
ccccctggtcctccaggactatccacttcataccctgaccttggccagattctccctcac
agcggcccttacgagagtcaaagcaacgaaaaactaaagaatggaggtgagatcagcgga
gccaccttgaaaatgcctgcattcacagcaaagctcacaaatccattccctctagttggt
tctcccatcatctttgataaactcctgcacaatggcaatcaggactacaattcacaaact
ggtattttcacctgtagcttaccaggaatttattactttgcctatcatgttcactgcaaa
ggaagtaacgtttgggtggcactgatgaaaaacaacgagccagtcatgtacacttatgat
gagtacaagaaagggttgctggatcaggcttcggggagtgctgtactccccttacaaaga
ggggatactgtttatgtacaattaccatcagatcaggcagcaggactttatgctggtcag
tatgtccactccaccttttccggatatttactgtactcgatgtga
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