Nematolebias whitei (Rio pearlfish): 119428934
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Entry
119428934 CDS
T08042
Symbol
ercc3
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPB
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03022
Basal transcription factors
nwh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
119428934 (ercc3)
09124 Replication and repair
03420 Nucleotide excision repair
119428934 (ercc3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwh03021
]
119428934 (ercc3)
03400 DNA repair and recombination proteins [BR:
nwh03400
]
119428934 (ercc3)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
119428934 (ercc3)
Transcription machinery [BR:
nwh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
119428934 (ercc3)
DNA repair and recombination proteins [BR:
nwh03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
119428934 (ercc3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
AAA_22
Motif
Other DBs
NCBI-GeneID:
119428934
NCBI-ProteinID:
XP_037552572
LinkDB
All DBs
Position
2:complement(12033905..12047076)
Genome browser
AA seq
783 aa
AA seq
DB search
MGKKDKGDRERKSKKRYYEDEDDEEETIGNESQEAVPAAAGKQVDESETKRDEYGAKDYR
SEMQLKNDHSSRPLWVAPDGHIFLEAFSPVYKYAQDFLVAIAEPVCRPNHVHEYKLTAYS
LYAAVSVGLQTSDIIEYLQKLSKTSVPDGIIQFIKLCTVSYGKVKLVLKHNRYFVESSFP
DVIQRLLQDNVIRECRLRGADGADTELITEVLHSKSAISKSVQEKGGPSTTQQPGDGQPS
NQQVPEDIFSYYEQMDKDEEEEEETQTVSFEIRQEMIEELQKRCIQLEYPLLAEYDFRND
SVNPDINIDLKPTAVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKSLVGVTAACTVRKR
CLVLGNSSVSVEQWKAQFKMWSTIDDSQICRFTSDAKDKPIGCSVAISTYSMLGHTTKRS
WEAEKVMEWMRSQEWGLMILDEVHTIPAKMFRRVLTIVQAHCKLGLTATLVREDDKIVDL
NFLIGPKLYEANWMELQNNGYIAKVQCAEVWCPMSPEFYREYVAIKTKKRILLYTMNPNK
FRACQFLIRFHERRNDKIIVFADNVFALKEYAIRLNKPYIYGPTSQGERMQILQNFKHNP
KINTIFISKVGDTSFDLPEANVLIQISSHGGSRRQEAQRLGRVLRAKKGMVAEEYNAYFY
SLVSQDTQEMAYSTKRQRFLVDQGYSFKVITKLAGMEEEDLMFSTRDDQQQLLQKVLSAS
DLDAEEEMVAGEVGVRPQFSRRAGTMSSMSGADDTVYMEYQSRGSKASAMGKSVHPLFKR
FRK
NT seq
2352 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaaaaagataaaggagatcgagagaggaagtccaagaaaaggtactacgaagac
gaagacgatgaagaagagacgatcggtaatgagtcccaggaggccgtgccggctgctgca
gggaagcaagtggacgagtcggagactaaacgcgacgagtacggagccaaagactaccgc
tctgagatgcagctgaagaacgaccactcctcacgcccgctctgggtggctccagatgga
cacatctttttggaagcattttcaccagtgtataaatacgcccaggactttttagtggct
atcgcagagcccgtgtgcaggccaaatcatgtccacgagtacaagctgaccgcatattcg
ctgtacgcagccgtcagtgtggggttacagacttctgatattatagagtacctacagaag
ctcagcaagacgtctgttcctgatggaatcatccagtttattaagctttgcactgtgagc
tatgggaaagtcaagcttgtgctcaagcacaacaggtattttgttgagagttccttcccc
gatgtgatccagcgccttctgcaggacaatgtgatccgagagtgtcgtctacgaggtgca
gacggagcggacactgagcttattactgaagttcttcacagcaaatctgcaatctccaaa
tctgtccaagaaaaaggaggtccttccaccacacagcagcctggtgatggacaaccttca
aaccagcaggtccctgaggacatcttcagctactatgaacagatggataaagacgaagag
gaagaggaggagactcagaccgtgtcctttgaaattcgccaggagatgatcgaagagctc
cagaagcgttgcattcagctggagtaccccctcctcgcagagtacgactttcgaaacgac
tctgtgaacccagacatcaacatcgacctgaagcccaccgccgtgctgcgaccgtaccaa
gagaagagtctccgcaagatgtttggaaatgggcgcgctcgatcgggagtcattgtgctg
ccatgcggagctgggaagtctctggttggcgtgacggcagcgtgcacggtgcgcaagcgc
tgcctggtgttgggtaactcctccgtgtccgtggagcagtggaaggcccagttcaagatg
tggtccaccatcgacgactctcagatctgccgcttcacctctgacgccaaggacaaaccc
atcggctgctcggtggccatcagcacctactccatgctgggtcacaccaccaagcggtcc
tgggaggccgagaaggtcatggagtggatgcggagccaggagtggggacttatgatcctg
gatgaggtgcacaccatccccgcaaagatgttccgccgtgtcctcaccattgtccaggct
cactgcaaactgggcctcacggctacactggtcagggaagacgacaagattgtggacctt
aacttcctgattgggcccaagctgtatgaagccaactggatggagctgcagaacaacggt
tatattgccaaagtccagtgtgctgaggtgtggtgtccgatgtccccagagttttacaga
gaatacgtggccattaagaccaaaaagcgcatcctgctctacaccatgaaccctaacaag
ttccgggcctgccagtttctcattcgcttccacgagcggcgcaacgacaagatcatcgtc
tttgccgacaacgtgtttgccttgaaggaatacgccatccgcctcaacaagccttacatc
tacggtcctacctcccagggagaacggatgcagattctgcagaatttcaaacacaacccc
aagatcaacaccatcttcatctccaaggttggcgacacttcctttgatttgccagaggcc
aacgttctgatccagatctcctcccatggtggatctcgcagacaggaggctcagagactt
ggaagagtcctgcgagcaaagaaaggaatggtggcagaggagtacaacgcatatttctac
tctctggtgtcccaggacacccaggagatggcgtactccaccaagaggcagaggttcctt
gtggaccaaggatacagctttaaggtaatcacaaagttagcaggtatggaggaggaggac
ttgatgttctccaccagggacgaccagcagcagcttctccagaaggttctctctgcttca
gacctggatgctgaagaggagatggtggctggagaagtcggcgttcgaccacagttttcg
aggcgagcaggcaccatgagctccatgtcgggcgcagacgacaccgtctacatggagtat
cagagccggggcagcaaagcttctgcaatgggcaaaagtgttcacccgctgttcaaacgc
ttcaggaagtag
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