KEGG   Nematolebias whitei (Rio pearlfish): 119429392
Entry
119429392         CDS       T08042                                 
Name
(RefSeq) replication factor C subunit 2
  KO
K10755  replication factor C subunit 2/4
Organism
nwh  Nematolebias whitei (Rio pearlfish)
Pathway
nwh03030  DNA replication
nwh03410  Base excision repair
nwh03420  Nucleotide excision repair
nwh03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nwh00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    119429392
   03410 Base excision repair
    119429392
   03420 Nucleotide excision repair
    119429392
   03430 Mismatch repair
    119429392
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nwh03032]
    119429392
   03036 Chromosome and associated proteins [BR:nwh03036]
    119429392
   03400 DNA repair and recombination proteins [BR:nwh03400]
    119429392
DNA replication proteins [BR:nwh03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    119429392
  DNA Replication Termination Factors
   ELG1-RFC complex
    119429392
Chromosome and associated proteins [BR:nwh03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    119429392
DNA repair and recombination proteins [BR:nwh03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     119429392
  Check point factors
   HRAD17(Rad24)-RFC complex
    119429392
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_22 nSTAND_NTPase5 AAA_lid_RFC1 RCF1-5-like_lid AAA_14 AAA_16 Viral_helicase1 Rad17 Mg_chelatase AAA_11 RuvB_N AAA_19 nSTAND3 DEAD MipZ AAA_5 AAA_assoc_2 AAA_18 RNA_helicase SLFN-g3_helicase AAA_28 AAA_30 AAA_24 NTPase_1 DNAX_ATPase_lid AAA_23 ABC_tran MeaB AAA_25 T2SSE AAA_2 PPR_1 BcsB AMP-binding_C_3 AAA_3 AAA_29
Other DBs
NCBI-GeneID: 119429392
NCBI-ProteinID: XP_037552957
LinkDB
Position
Unknown
AA seq 335 aa
MDADMAEASSRQKPMESSLKTDSEAVEPPSRSSYELPWVEKYRPLKLSEIVGNEETVSRL
EVFAREGNVPNIIISGPPGTGKTTSILCLARALLGASMKDAVMELNASNDRGIDVVRNKI
KMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRIMEIYSRTTRFALACNASDKIIEP
IQSRCAVLRYSKLTDGQILARLQDVVDKERLSVSDDGLEAVIFTAQGDMRQALNNLQSTN
SGFGFINSENVFKVCDEPHPLLVKSMLGHCVEGNIDEAYKVVEQLWALGYSPEDIIGNIF
RVCKTYQMAEYLKLEFIKEIGLTHMRVVEGVNSQL
NT seq 1006 nt   +upstreamnt  +downstreamnt
atggacgcggacatggccgaggcgtcgagccgccagaaaccgatggaaagcagcctaaag
acggactcggaggccgtggagcctccgtctcggagctcctacgagctgccgtgggtggag
aagtaccggccgctgaagctgagtgagatcgtggggaacgaggagaccgtgagccgcctg
gaggtgttcgcccgggaggggaacgtcccgaacatcatcatctcaggtcctcccggcaca
ggaaagaccaccagcatcttgtgtttggcccgggctctgctgggagcctcgatgaaggac
gctgtgatggagctgaacgcctccaacgacaggggcatcgacgtggtgaggaacaagatc
aagatgtttgctcagcagaaggtcacgctgcctaaaggtcggcacaagatcatcatcctg
gacgaagctgacagcatgacggacggagcccagcaggccctcaggaggatcatggagatc
tactccaggacgacgcgcttcgccctcgcctgcaacgcctccgataagatcatcgagccg
atccagtcccgctgcgccgtgctgcgctactccaagctgacggacggacagatcctggcc
cggctgcaggacgtggtggacaaggagcgcctgtccgtgtccgacgacgggctggaggcc
gtcatcttcacagcgcagggagacatgagacaggcgctgaacaacctgcagtccaccaac
tcgggcttcggcttcatcaacagcgagaacgtgttcaaggtgtgcgacgagccccacccc
ctgctggtgaagagcatgctgggacactgcgtggaggggaacatcgacgaggcctacaag
gtggtggagcagctgtgggctctgggctactctccagaagacatcatcggaaacatcttc
agggtctgcaagacctaccagatggccgagtacctcaaactggagttcatcaaggagatc
ggtctgacccacatgcgggtggtggagggggtgaactcgcagctgc

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