Nematolebias whitei (Rio pearlfish): 119430528
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Entry
119430528 CDS
T08042
Symbol
upf1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03013
Nucleocytoplasmic transport
nwh03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119430528 (upf1)
03015 mRNA surveillance pathway
119430528 (upf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119430528 (upf1)
Enzymes [BR:
nwh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119430528 (upf1)
5.6.2.5 RNA 5'-3' helicase
119430528 (upf1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119430528 (upf1)
mRNA cycle factors
Common to processing body (P body) and stress granule
119430528 (upf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
DEAD
nSTAND3
AAA_16
Helicase_RecD
ATPase
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
AAA_5
Motif
Other DBs
NCBI-GeneID:
119430528
NCBI-ProteinID:
XP_037553877
LinkDB
All DBs
Position
3:9571162..9583054
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AA seq
1100 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQAQSQLDGQVNGPD
EGLHNGGLDDSVIKTSQLLGELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHMVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKDNPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSGDMRLMQGDEICLRYKGDLAPLWKGIGHV
IKVPDNYGDEIAIELRSSVGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGY
IYHKLLGHEVEDVTIKCQLPKRFTAPGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTV
TSATIVYHLSRQGNGPVLVCAPSNIAVDQLTEKIDKTGLKVVRLCAKSREAIESPVSFLA
LHNQISNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGA
GDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGL
SQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRIKKGFDFQWP
QPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQR
SYLVQYMQFSGSLHTKLYQQVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLN
VALTRAKYGVIIVGNPKALSKQPLWNNLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLV
NTINPGGRFMSTAMYDAREALIPGSAYDRSSAAGRPSNMYFQTHDQIGMIGAGPGHMAAM
NIPLPFNLVMPPVPPPSYLGQTNGPAAGRGMMKGKPGRGGRQRVRGSANQCASQGNGPNS
QASQDGASQSFSQGPLTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQD
STYQGERAYQHGGVTGLSQY
NT seq
3303 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccaaaccctcaccttcctggacactgaggaa
gccgagctgctcggagcggacacccagggctccgagtacgacttcaccgatttcacgctt
cccagtcagacccaaactcaagcccagagccagctggacggccaggttaatggtccagat
gaaggtctccacaacggagggttggatgactccgtgatcaaaaccagccagttgttgggc
gagctgaacttcgaggaggatgaagaagacacgtattacaccaaagaccttcccgtacac
gcatgcagctattgtggtattcatgacccggcatgtgtggtgtactgtaacaccagcaag
aagtggttctgtaatggtcgtggcaacacatctggcagccacattgtgaaccacatggtg
agggccaaatgcaaagaggtgacactgcataaagatggaccgctgggtgaaactgtgctg
gagtgctacaactgtggatgtcgcaacgtcttcctcctgggctttatcccggccaaagct
gactctgtggtggtgcttctttgcaggcagccctgtgccagccagagcagcctgaaggac
atcaactgggacagctcacagtggcagccactgatccaagatcgctgctttttgtcctgg
ctggtgaagatcccatcagagcaggagcaactccgagctcgtcagatcactgcccaacag
atcaataagctggaggaactctggaaggacaatcccaccgctaccttggaagacctggag
aaacctggtgtagacgaggagccccagcatgtgctgctgcgctacgaggatgcttaccag
taccaaaatatatttggcccgttggtcaaactggaggccgactatgacaaaaagcttaaa
gagtcccagactcaagacaacataacagtcaggtgggacctgggactgaacaaaaagcgg
attgcgtatttcactctgcccaagacggattcaggtgacatgcgactgatgcaaggtgat
gagatctgcctgcgctacaagggagacttggctccgctgtggaagggcattggtcacgtc
atcaaagtaccagacaactatggcgatgaaattgccattgagttgcggagcagcgttgga
gcgcctgtggaaatcccacacaacttccaggtggactttgtttggaaatccacctctttt
gacaggatgcagagcgccctgaaaacctttgctgttgatgagacttccgtgtccggctac
atttaccacaaacttttaggccacgaggtcgaagatgtcaccatcaagtgccagctgcca
aagcgcttcactgccccgggtctgcctgaccttaatcactcacaggtgtacgctgtaaaa
actgtgctgcagaggcctctcagtctgatccagggccctcctggcactgggaagaccgtc
acctctgctacgattgtttaccacctgtcccggcagggcaatgggccggttttggtgtgt
gctcccagtaacatagctgtggaccagttgactgagaagatcgacaagactggcctgaag
gtagtccgcctgtgcgctaagagccgagaggctattgagtcaccggtgtcttttctggct
ctgcacaaccagatcagcaacatggacagcatgccggagctgcagaagctgcagcagctg
aaggatgagactggtgagctgtcgtctgctgatgaaaaacgctacagggctttgaagcgc
actgctgagagggagctgctcatgaatgctgatgtgatttgctgcacctgtgttggagct
ggagatccccgtctggccaagatgcagtttcgttccatcctgatcgatgagagcactcag
gccactgaacccgagtgcatggtgcctgtggttttgggggcaaagcagcttattcttgtt
ggcgaccactgccagctcggacctgttgtgatgtgtaagaaggcagccaaggcaggtctg
tcccagtctctgtttgaacgattggtggttctgggaatccggccaatccgcctgcaggtc
cagtaccgcatgcacccagctctcagtgccttcccctccaacatcttctacgagggttcc
ctgcagaatggcgtcaccgcagctgatcgcatcaagaaaggcttcgatttccagtggcct
cagcctgataagcccatgttcttctatgtgactcagggtcaggaggaaatagccagttct
ggaacttcatacctcaacaggaccgaggcagccaacgtagagaaaatcaccaccaggttg
ttgaaagcaggagctaaacctgaccagataggcatcatcaccccatatgagggtcagcgc
tcctacctggtccagtacatgcagttcagtggctcgcttcacaccaaactctatcagcaa
gtggaaattgccagcgtggacgccttccaaggcagagagaaggatttcatcatcctttct
tgtgtccgtgccaatgagcaccagggaattggcttcctgaatgaccctcgtcgtctcaac
gtggcgctgaccagagccaagtatggtgtgatcattgtggggaaccccaaagcgctctca
aagcagccgctgtggaacaacctgctgaactactacaaggagcagaaggtccttgtggag
ggacccctcaacaacctgcgggagagcctcatgcaattcagcaagccccgtaaactggtc
aacaccatcaaccccggggggcgctttatgagtactgccatgtacgatgctcgcgaggct
ctcatccctggctcagcctatgatcgcagcagtgctgctggacgtccatccaacatgtac
tttcaaacacacgaccagatcgggatgattggagcaggccctggtcacatggctgccatg
aatattcctttacccttcaacctggtgatgcccccggtgcctccccccagctacctgggt
cagaccaacggtcctgctgcaggtcggggtatgatgaaggggaaacccgggcgtggcggg
agacagagggtccgtggttcggcgaaccagtgtgctagtcagggtaacggaccgaacagc
caggcgagccaggacggagcctcccagtccttctctcaggggccactgactcagggttac
atctccatgagccagccctctcagatgagccagcctggcctctctcagccagagttgtct
caggatagctatcttggcgatgagttcaagtcccaaatcgatgtggctttgtcccaggac
tcaacttaccagggtgaacgtgcataccaacatggcggggtgaccggactgtcacagtac
taa
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