Nitrobacter winogradskyi: Nwi_0050
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Entry
Nwi_0050 CDS
T00276
Name
(GenBank) DNA helicase/exodeoxyribonuclease V, subunit A
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
nwi
Nitrobacter winogradskyi
Brite
KEGG Orthology (KO) [BR:
nwi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwi03400
]
Nwi_0050
Enzymes [BR:
nwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Nwi_0050
DNA repair and recombination proteins [BR:
nwi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
Nwi_0050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
PDDEXK_1
UvrD_C_2
DEAD
AAA_16
AAA_30
nSTAND_NTPase5
NERD
Motif
Other DBs
NCBI-ProteinID:
ABA03318
UniProt:
Q3SWM3
LinkDB
All DBs
Position
59255..62863
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AA seq
1202 aa
AA seq
DB search
MVKAPRPVHPDASARQQRASDPATSVFVSANAGSGKTHVLVQRVIRLLLNDVDPARILCI
TFTKAAAANMAERVFSTLGHWVTLDDEALNGALRDVGIAQPGARWRERARKLFASALETP
GGLKVQTIHALCTRLLQQFPFEAEVPARFTVLDERDQTEMMERASLKVMLDASQDPDSPS
GLALRYAMSAATDSTLRDVLNQACLSRDHALTQTDDRGIAQAIRDAADALGVDPAERVED
VEREIVDGPNLPRSKWLDTAALIATGSSNDVKQAERLRAAHAEAGDAARADRYLDVFLTG
DGSPRKSFVTRKISDARPDVAEMLADECQRVIALLGRRRAINIRDRTQSLLVIAAAVAAH
YRREKHERGLLDYDDLIDKTLRMLEQTSPGWVHYKLDRGVDHVLIDEAQDTSPKQWDIVE
RIIADFTTGEGAREGVRRTVFAVGDEKQSIFSFQGAAPREFDERRRKLERKFTDAKLPFR
KEDFIYSFRSGKTILESVDHVFRDPAIYASIHAVGAHPVHESLADAAPGIVDLWSLEERD
KREEMEGWRAPFDAVTATSPEVKLARRIRDEIKSLIAQGAMTGHLGNRRPLGYGDILVLV
RRRGNAFDAVIQALKQSGIPVAGADRLKLTEHIAIIDLMNLADALLLPRDDLALAVALKS
PLFGLDDDDLFKLAWQRKGTLRDALAGHATADDKFRDAFESLKRCESRAARDTPFAFFAW
LLGEEAGRRRILRRLGHEANDALDEFLELALTCERKAPASLQGFMAWLRAADTEVKRDME
ISRDEVRVMTVHGAKGLEASVVFLADTSTSPADTERLSLIRMGRGNAPAGVAGVTIWAGR
KAEDPPCVAQARAAMTAETEHEYRRLLYVAMTRAADRLIVGGCKPANRKDVREFSWYHLI
EKGLANSGLAMQEIETASGKVKRFTRPDHDDPGSNRSRIMNVIDSNILERDAGGKPLHTF
PHPALEEAEPDAAGPAPPASPGATRIPLPPWLHLAAAPEAPARRSLYPSDADEAAHQRAP
AGAIPDQRHRARLRGTLVHRLLQSLPEVPRDRRREAALSYLGRNASGWGKTEHDALAARV
VAVLDDARFAPVFAEGSRAEVAIVGRLTTRRGDPLPVSGQIDRLVVTPHGVLVVDYKTSP
APASLADVPPAYIRQLALYRAMLAGLYPELPVNAALLWTETPEMMEISASTLDAALEAII
SV
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaagcgccgcgccccgttcatcccgacgccagcgcgcgccagcagcgtgcgtcc
gatccggccacatcggtgttcgtgtcggccaacgcgggatcgggcaagacgcacgttctc
gttcagcgcgtgatccgccttctgctcaacgacgtcgaccccgcgcgcatcctctgcatc
accttcaccaaggccgccgccgcgaacatggcggagcgggtattctcgacgctgggtcac
tgggtcacgctcgacgatgaggccttgaacggggcgctgcgcgatgtcggcatcgcgcag
cccggcgcgagatggcgcgagcgggcgcgaaagctgttcgcctccgcgctggaaacgccg
ggcggcctgaaagtgcagaccatccacgcgctctgcacgcggctattgcagcagtttccg
ttcgaggccgaagtgccggcgcgtttcaccgtgctcgacgagcgcgaccagaccgaaatg
atggagcgcgccagccttaaggtcatgctcgacgcctcgcaagatccggacagcccgtcc
ggcctcgcgctgcgatacgccatgagcgcggccaccgattcaacgctgcgcgacgtcctc
aatcaggcctgcctgagccgggatcatgccctgacccagacggacgaccgcggcatcgcg
caggcgatccgggacgccgccgatgcgctcggtgtggacccagccgagcgcgtcgaggac
gtcgaacgcgagatcgtcgacgggccgaacctgccgcgaagcaagtggctcgatacggcg
gcgctgatcgcaacaggcagctcgaacgacgtcaaacaggccgaacggctgcgtgccgcc
catgcggaagcgggcgacgccgcgcgggccgatcgctatctcgacgtcttcctgacgggt
gatggcagcccgcgcaaatccttcgtcaccaggaagatcagcgatgcccggcctgatgtc
gctgaaatgcttgccgatgaatgccagcgcgtgatcgcgctgctcggacgccgccgcgcg
atcaacatccgcgaccgcacgcaatccctgctcgtcatcgccgccgcggtcgccgcccac
taccggcgcgagaaacacgagcgcggcctgctcgactatgacgacctgatcgacaagacg
cttcggatgctggagcagacctcgcccggctgggttcactacaagctcgatcgcggcgtc
gatcacgtgctgatcgacgaggcgcaggataccagcccgaagcagtgggacatcgtcgag
cgcatcatcgcggacttcaccaccggcgaaggcgcgcgcgagggcgtgcgccggaccgtg
ttcgcggtcggcgacgagaagcagtcgatcttctcgttccagggcgcggcgccgcgcgag
ttcgacgaaaggcggcgcaagctggagaggaagttcaccgatgcaaagcttccgttccgc
aaggaggatttcatctactcgttccggtccggcaaaacgatcctcgaatcggtcgaccat
gtgttccgcgatcccgcgatctacgccagcatccacgcggtcggcgcccaccccgtgcat
gaatcgctggcggacgccgcacccggcatcgtcgatctctggagccttgaggagcgggac
aagcgcgaggagatggagggctggcgcgcaccgttcgatgcggtcaccgcaaccagcccc
gaggtcaagctcgcacgacgcatccgcgacgagatcaagtcgctgatcgcgcaaggcgcc
atgaccggacacctcggcaaccgccgtccgctcggttatggcgacatcctggtgctggtg
cggcggcggggcaacgcgttcgacgccgtcatccaggcgctgaagcagtccggcattccg
gtggccggcgcggatcgtcttaaactcaccgagcacatcgcgatcatcgacctgatgaac
cttgcggatgcgctgctgctgccaagggacgatctggcgctggcggtggcgctgaaaagc
ccgctgttcggcctcgacgacgacgacctgttcaaactggcgtggcagcgcaagggcacg
ctgcgcgacgcgctcgccgggcacgcgacagccgatgacaaattccgcgacgccttcgaa
agcctgaagcggtgcgaaagtcgcgccgcgcgcgatacgccgttcgcgttctttgcatgg
cttctgggcgaggaagccggacggcggcggatcctgcgccggctcggccatgaagccaat
gatgcgctcgatgagttcctcgaactggcgctgacctgtgagcgcaaggcccccgcgtcg
ctgcaaggcttcatggcgtggctgcgcgccgccgataccgaggtgaagcgcgacatggaa
atctcgcgcgacgaagtccgcgtgatgaccgtgcacggcgcgaagggactggaggcctcg
gtggtgtttctcgccgacacctcgacgtcgccggccgacaccgaacgtctgagcctgatc
cgcatggggcgcggcaacgcacccgccggcgtcgccggggtgacgatctgggcaggcagg
aaggccgaggacccgccctgcgtggcgcaggcccgcgcggccatgaccgcggaaaccgaa
catgagtatcgccgcctgctttacgtcgcgatgacgcgcgcggcggaccgcctgatcgtc
ggcggctgcaaaccggccaaccgcaaggatgtccgggagttctcctggtaccacctgatc
gaaaaaggtctggccaattccggccttgcgatgcaggagatcgaaaccgcaagcggcaag
gtcaagcgtttcacccggccagatcacgatgatcctggatcgaatcgatccaggatcatg
aacgtgatcgattctaatattttagagcgggatgcgggcggaaaaccgctgcacactttt
cctcatcccgctctagaggaagccgaaccggatgccgcgggcccggcaccgccggcgtcc
cccggcgctacccggatcccgttgccgccgtggctgcatctcgcagccgcgccggaagca
cccgcgcgccgatcgctgtatccatcggatgccgacgaggccgcgcatcaacgcgcgccg
gccggcgccatcccggatcagcgccaccgcgcgcgactgcgcggcacgctggtccatcgc
ctgctgcaatccctgcccgaggtgccgcgggaccgccgccgcgaggcggcgctgtcctat
ctcgggcgcaacgcgagcggctggggcaagaccgagcacgacgcgctcgcggcgcgggtc
gtggcggtgctcgatgatgcgaggttcgcccccgttttcgcggagggcagccgggccgag
gtcgcgatcgtcgggcggctgacgacgcggcggggcgatcccctgccggtctcgggccag
atcgaccggctcgtggtcactccgcacggggttctggtcgtcgactacaagaccagcccc
gcacccgcgagcctggccgacgttccgcccgcctatatccgccagctcgcgctctatcgc
gcgatgctcgcgggcctgtacccggaactgcccgtcaacgcggcgctgctctggaccgag
acgcctgaaatgatggagatttccgcctcgacgctggatgccgccctggaagccatcatc
tcggtgtga
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