KEGG   Nitrobacter winogradskyi: Nwi_0100
Entry
Nwi_0100          CDS       T00276                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
nwi  Nitrobacter winogradskyi
Pathway
nwi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:nwi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Nwi_0100
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:nwi03021]
    Nwi_0100
   03019 Messenger RNA biogenesis [BR:nwi03019]
    Nwi_0100
Transcription machinery [BR:nwi03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Nwi_0100
Messenger RNA biogenesis [BR:nwi03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Nwi_0100
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 S1CSD-TOTE-2 AAA_25 NACHT AAA Spore_III_AA
Other DBs
NCBI-ProteinID: ABA03368
UniProt: Q3SWH3
LinkDB
Position
complement(120114..121379)
AA seq 421 aa
MREMKLQDLKAKTPAELVSFAEELGVENASTMRKQELMFAILKQLAIQETDIIGEGVVEV
LSDGFGFLRSPDANYLPGPDDIYVSPSQIRRFGLRTGDTIEGHIRSPKEGERYFALLKVN
TLNFEDPEKSKHKVNFDNLTPLFPDQRFRLELEDPTRKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLMQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELILDRKVADKRTFPA
IDIARSGTRKEELITDPQLLKKMYVLRRILNPMGTMDAIEFLLDKLRNTKNNSEFFESMN
T
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcgggaaatgaaacttcaagacctcaaggccaagactccagccgaactcgtctcgttt
gcggaggagcttggggtcgagaacgccagcaccatgcgcaagcaggagctgatgttcgcc
attctgaagcagcttgccattcaggaaaccgacatcatcggcgagggtgtcgtcgaggtc
ctctcggatggcttcggctttctgcgctcgcccgatgccaactatctgccgggtccggac
gatatttacgtttcaccttcgcagattcgccgcttcggcctgagaaccggcgacaccatt
gaggggcacatccgcagccccaaggaaggcgagcgctattttgcactgctgaaagtcaat
acgctcaatttcgaagaccccgagaagtcgaagcacaaggtcaacttcgacaacctgacg
cccctgtttcccgatcagcggtttcgcctcgaacttgaagatcctacccgcaaggatttg
tcggcgcgggtcatcgatatcgtcgctccgatcggcaagggccagcgcgccttgatcgtg
gcgccgccgcgcaccggcaagaccgtgctgatgcagaacatcgcgcactccatcaccgct
aatcatccggagtgctatctgatcgttcttctgatcgacgagcgcccggaggaagtcacc
gacatgcagcgctcggtgaagggtgaagtcgtatcctcgactttcgacgagcccgcggtg
cgtcacgttcaggtcgccgagatggtgatcgagaaagccaaacgcctggtcgaacacgga
cgcgatgttgtcatcctgcttgattcgatcacgcgccttggccgcgcctacaacaccgtg
gtgccctcctccggcaaggtgctgaccggcggcgtcgacgccaacgccctgcagcggccg
aagcgattcttcggcgccgcccgtaatatcgaggaaggcgggtcactgaccatcatcgcc
accgcgctggtcgataccggaagccggatggacgaggtgatcttcgaagagttcaagggc
accggcaattctgagttgatcctcgaccgcaaggtcgccgacaagcgcaccttcccggcg
atcgacatcgcccgctccggaacgcgcaaggaagaactcatcaccgatccgcaactgctc
aagaagatgtatgtgctgcggcgcatcctcaatcccatgggcaccatggatgcgatcgag
ttcctgctggacaagctgcgcaacaccaagaacaattccgagttcttcgagtcgatgaat
acctga

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