Nitrobacter winogradskyi: Nwi_0314
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Entry
Nwi_0314 CDS
T00276
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nwi
Nitrobacter winogradskyi
Pathway
nwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nwi_0314
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwi03019
]
Nwi_0314
Enzymes [BR:
nwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Nwi_0314
Messenger RNA biogenesis [BR:
nwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Nwi_0314
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
SUa-2TM
Helicase_C_2
HEM4
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
ABA03581
UniProt:
Q3SVW0
LinkDB
All DBs
Position
complement(351424..352854)
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AA seq
476 aa
AA seq
DB search
MERSNLLSSFQDFGLADPISRALAEENYLTPTPIQAQTIPIALTGRDLVGIAQTGTGKTA
AFALPILHRLLQNRIKPQPKSCRVLVLSPTRELSGQILENFNAYGRHLRLTSALAIGGVP
MGRQVRAVMHGVEVMVATPGRLLDLVQSNGLKLGQVEFLVLDEADRMLDMGFIHDIRKVV
AKLPAKRQTLFFSATMPKDIAELANQMLRDPARVAVTPVSSTVDRITQRIIQVDHAGKAA
FLAQLLKQEPVNRALIFTRTKHGADKVVKSLAKSGIRSNAIHGNKSQNHRERVLAEFRAG
EIRTLVATDIAARGIDVDGISHVVNFDLPNVPETYVHRIGRTARAGTDGAAISLVAGAEE
MAYLRDIEKLIRVVLPREDRRTSGQREAAPAPQQNRGGSPAPHGHAARAGDASSGKGSRR
RRSKKGTPQTSRRPESGRQETSRSAPGSKPGGMQGVAFLHRKSRPARLKSSQPPQR
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaagcaaccttttgtcctcctttcaggatttcggcctcgccgatccgatttca
cgtgcgctcgcggaagagaattatctgacgcccacgcccatccaggctcaaaccatccct
attgccctcaccggacgcgaccttgtcggaattgcccagaccggcaccggcaagaccgcg
gccttcgcgttgccgatcctgcatcggctgcttcagaatcgaatcaagccgcaacccaag
agctgccgggttctggtgctcagcccgacgcgcgaactttcaggccagattctcgaaaac
ttcaacgcctacggccggcacctgcgcctgacctcggccctcgcgatcggcggggtcccg
atgggacgtcaggtccgcgccgtgatgcatggcgtcgaggtgatggtcgcaacgccgggc
cgcctgctcgatctcgttcaaagcaacgggctgaaactcggtcaggtcgaatttctggtg
ctggacgaagccgatcgcatgctcgacatgggcttcatccacgacatccgcaaagtcgtc
gccaagctgccggcgaagcggcagacgctgtttttctcggccaccatgccgaaggacatc
gcggaactcgccaaccagatgctgcgcgacccggcccgcgtcgcggttacgccggtctcc
tcgaccgtggaccgcatcacccaacgcatcattcaggtcgatcatgcaggcaaggccgcg
ttcctggcccagcttctgaagcaggaaccggtcaaccgggcgctgatcttcacgcggacc
aagcacggcgccgacaaggtcgtgaaaagcctcgccaagtccggcatcaggtccaacgcg
atccacggcaacaaatcgcagaaccaccgcgaacgggtgctggcggagtttcgggccggc
gagatccggacgctggttgcgaccgacatcgcggcacggggcatcgacgtcgacgggatc
agccacgtcgtcaatttcgacctcccgaacgtcccggaaacctacgtccaccgtatcggc
cgcaccgcgcgggcaggcaccgatggcgcggcgatctcgctggtcgccggagcggaagag
atggcctatctccgtgatatcgagaaactgatccgcgtggtcctcccaagggaagaccgc
cggacatctgggcagcgtgaggcggcgccggctccccagcaaaatcgcggcggaagcccc
gcaccccacggtcatgcggccagagcgggcgacgcctcctcggggaaaggttcccgccgt
cgccgcagcaagaaggggacgccgcaaaccagccggcgaccggaatccggccggcaggag
acctcccgttcagcaccggggagcaagccgggtggaatgcagggggttgccttcctgcac
cgcaaaagccggcccgcgcgattgaaatccagtcagccgcctcagcgctag
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