Nitrobacter winogradskyi: Nwi_0359
Help
Entry
Nwi_0359 CDS
T00276
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
nwi
Nitrobacter winogradskyi
Brite
KEGG Orthology (KO) [BR:
nwi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwi03019
]
Nwi_0359
Enzymes [BR:
nwi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Nwi_0359
Messenger RNA biogenesis [BR:
nwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Nwi_0359
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
Flavi_DEAD
AAA_30
HA2_C
ResIII
wHTH-PRTase_assc
AAA_19
Motif
Other DBs
NCBI-ProteinID:
ABA03626
UniProt:
Q3SVR5
LinkDB
All DBs
Position
403840..406458
Genome browser
AA seq
872 aa
AA seq
DB search
MARVRAMRYETGRKAVNHAPRSDRSLTEPFANPLPIDAVLGELGRKLATHDTTVLVAPPG
AGKTTRVPLALLDAPWIAGRKIVVLEPRRIAARASAERMARTLGERVGETVGYRVRFGSR
VSRGTRIEVVTEGIFSRRILDDPELDGVAAILFDEFHERSLDADLGLALARDVQSGLRED
LRILVMSATIDGARVAKLLGNAPVIESKGRAFPVETRYLGRKPDSPVERQMADAIAMALR
AEDGSLLAFLPGAAEIRRTQNMLAERIHDASIEIVPLFGALDAAVQDRAIAPAPKGRRKV
VLATSIAETSLTIEGVRIVVDSGLARVPRFEPDIGLTRLETMRASRAAVDQRRGRAGRTE
PGVCYRLWDEPQTASLAAYTQPEILSADLSSLVLDLAQWGVRDPATLAFLDPPPAPALNE
ARSLLRELGALDADGRITDEGKSLRALALPPRLARMIVGAHRLGSGREAADIAAVLTERG
LGGDSVDLDARLDHFRRDRSPRAVGARQLAERWVSQVAANESVPSSPRGVTSSAPSDRAS
LPVTGAQGGEELGAGEMLTLAFPDRVARNRGNGSFVLANGRGASVDPASRLAREPFIAVA
ELTGTAASGRILLAAPISQGQIELRFAGQIETDEDILFDRAAMSLRGRRRKRLRAIMLAE
APVAVAPSIATARILAEGLIDAGLDRLPWSKPLKQWRDRVMFLRAAEGGEWPDLSDAGLA
ATAETWLAPALSDKTALKEFSAGDLSEALMALLPWNLRARMEREAPTHFEAPTGTMLAID
YEAGQGPTIAVRLQELFGLTAHPSIAQGKVPLVLELLSPAHRPVQVTRDLPGFWRGSYAA
VRSDLRGRYPRHPWPDDPANAMPTRRVKPRGT
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
ttggcccgcgtccgggccatgcgttatgagacggggcgtaaagccgttaaccatgccccg
cgttcggatcgatccttgacggaaccattcgccaacccgcttccgatcgacgccgtgctc
ggcgaactcgggcgcaagcttgctacgcacgacaccacggtattggtggcgccgccgggc
gccggcaagacgacgcgggtgccgctagcgctgctcgacgcgccctggatcgccggcagg
aagatcgtcgttctggagccgcgccggatcgcggcgcgcgccagcgcggaacggatggcg
cggacgctgggtgagcgcgtgggcgagaccgtgggctatcgcgtgcgcttcggctccagg
gtctcgcgcgggacgcgcatcgaggtcgtcaccgaagggatcttctcccggcggattctc
gacgatcccgaactggacggcgttgccgcgatcctgttcgacgagtttcacgagcgttcg
ctcgatgcggatctcgggcttgcgctggcgcgcgacgtgcagagcggcttgcgggaggat
ctgcgcatcctggtgatgtccgcgaccatcgacggcgcacgggtggcgaagctgcttggc
aacgcgccggtgatcgaaagcaagggccgcgccttcccggtggagacgcggtatctcggc
cgcaagcccgattcacccgtggagcggcagatggccgacgcgatcgccatggcgttgcgc
gcggaggacggttcgctgctggcgttcctgccgggcgctgccgaaatccggcgcacccag
aatatgctcgccgaaagaatccatgatgcctcgatcgagatcgtaccgctgttcggcgcg
ctcgacgcggcggtgcaggatcgcgccatcgcgcccgcgccgaaggggcgtcgcaaggtg
gtgctggccacctcgattgccgagacctcgctgaccatcgagggggtgcgcatcgtggtg
gattccggcctggcgcgggtgcctcgttttgagcctgacatcggcctgacgcggcttgaa
accatgcgcgcctcgcgcgccgccgtggaccagcgtcggggccgcgccgggcgcaccgag
cccggtgtctgttatcggctatgggacgagccgcagaccgcctcgcttgccgcctatacc
cagcccgagatcctcagcgccgatctgtcgtccctggtgctcgatctggcgcaatggggg
gtgcgcgatcccgccacccttgcgtttctcgacccgccgcccgctccggcgttgaacgag
gcgcggagtctgctgcgcgagcttggcgcgctcgacgccgacgggcggatcacggatgaa
ggaaaaagcctgcgcgcgttggctctgcccccccggctcgcgcgcatgatcgtgggcgcg
catcggctcggttcgggtcgggaggccgccgacatcgcggcggtgctgaccgagcggggc
ctgggcggcgacagcgtcgatctcgacgcgcggctcgatcattttcgccgtgaccgctcg
ccacgcgccgtcggcgcaaggcagttggcggagcggtgggtgtcgcaggtggcggcgaat
gagagtgtgccgtcatcgccgcgcggcgtgacgtcttcagccccttccgatcgcgcgtcc
ttgcccgtcacgggtgcacaaggcggagaggaactcggtgccggcgaaatgctcactctc
gcgtttcccgatcgcgtggcgcgcaatcgcggcaacgggtcgttcgtgctcgccaacggc
cgtggtgcgtcggtcgatccggcctcacggctggcgcgggagcccttcatcgcggtcgcc
gagctgaccggcacggcggcgagcggccgtatcctgctggccgcgccgatctcgcaaggc
cagatcgagttgcgttttgccggccagatcgagaccgacgaggacatcttgttcgatcgc
gcggcgatgagcttgcgagggcggcggcgcaagcggctgcgcgcgatcatgcttgccgaa
gcaccggtggcggtcgcgccgtcgatcgcgacagcgcgcatcctggcggaaggactgatt
gatgcggggctggatcgcttgccgtggtcgaagccgctgaagcagtggcgcgatcgcgtc
atgtttctgcgcgcggcggaaggcggggagtggccggacctctccgatgccgggctcgcg
gccacggccgaaacttggctggcgcccgcgctgtccgacaagaccgcgttgaaggaattt
tcagccggcgatctgtcggaagcgctgatggcgctgctgccgtggaatttgcgcgcgcgg
atggagcgcgaggcgccgacccatttcgaggcgccgacaggcaccatgctcgcgatcgac
tatgaagccgggcaggggccgaccatcgctgtccgattgcaggaattgttcggcctgacc
gcgcatccatcgatcgcgcaaggcaaggtgccgctggttctggaactgctgtcgccggcg
catcgtccggttcaggtgacgcgggacctgccggggttctggcgcggcagctatgccgcc
gttcgctcggatctgcgcgggcgctatccccgccatccctggccggacgatccggccaat
gcgatgccgacacggcgggtcaagccgcgcgggacgtga
DBGET
integrated database retrieval system
