Nitrobacter winogradskyi: Nwi_1720
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Entry
Nwi_1720 CDS
T00276
Name
(GenBank) RNAse E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nwi
Nitrobacter winogradskyi
Pathway
nwi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Nwi_1720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwi03019
]
Nwi_1720
03009 Ribosome biogenesis [BR:
nwi03009
]
Nwi_1720
Enzymes [BR:
nwi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
Nwi_1720
Messenger RNA biogenesis [BR:
nwi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Nwi_1720
Ribosome biogenesis [BR:
nwi03009
]
Prokaryotic type
rRNA processing factors
Nwi_1720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
ABA04981
UniProt:
Q3SRW0
LinkDB
All DBs
Position
1878284..1881463
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AA seq
1059 aa
AA seq
DB search
MGRPRATRLPCHAPSASKSFKMPNKPNKMLIDATHPEETRVVVVRGNRVEEFDFESAQRK
QLRGNIYLAKVTRVEPSLQAAFIEYGGNRHGFLAFSEIHPDYYQIPVADRQALIEADERA
HREAEEESEDRSSRRRSRHRNARRRDHGERVQSAVVENGEHQVAGADGTQSDPSHSDPSH
DEFAAGDHLGQQHDVQDHDQPNDPDHHHLDDDDHSHESGSISLYGSDYETVADHLPESPD
FAFAADSDNGDHEQDENQEDTGDDQVAASSEEDLPSIAPHDAVGSEPSADDGARDDQVEP
AISSSPNEDHALGVHASGDHDHDEPHAEEFHGDEVRVEDRADDDGDDDEEEEQVESVGGD
DALEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMP
NTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGVILRTAGAARTKPEIKRDFEYLIRM
WETVRDMTLRSQAPTLVYEEGSLIKRSLRDLYSKEIDEILVAGEAGYHEARGFMKMLMPS
NARAVKQYRDCQPLFSRMGVESQLDAMFLPTVQLRSGGYIVINQTEALVSIDVNSGRSTR
EHHIKDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRSNRAVERKLSECLRHDR
ARIQVGRISHFGLLEMSRQRIRASMLESSTEPCPQCGGSGHVRSVPSVALQLLRSLEEVL
MKGATHNLIVRTRINVALYVLNQKREHLRALEHSFRVGLSVVADPAIAGQQSFVIDRGEQ
VHTLEAAKALLATQLVTYPPQAEDVQDDEPTLDTETETEADDAEVRVDEQAGGETEGDGR
KRRRRRRRERSSETNDSQVSQAVEVPDSVQIAAEFAAARFMIDDVENEGEDSSAQESAAP
ADQPADERRPRRRGRRGGRRRRGTNGANPVDSASDELNVTSVSEAVDAVADLDSVSLAPE
ARSEPAESETQPQQQSEESASSPAETGNGTVPEPEKAVCRRSTVREKVSFTSQEEPPSVP
VVQGEPEESTPEAQQPPQASDETRPRRAGWWSRRFGGGT
NT seq
3180 nt
NT seq
+upstream
nt +downstream
nt
atgggccggccgcgcgccacgcgcttgccatgtcatgcgccctccgcctccaagagcttc
aaaatgcccaacaagcccaacaaaatgttgatcgacgccacccacccggaagaaaccagg
gtggtggtggtccgcggtaaccgcgtcgaggaatttgatttcgaatccgcccaacgcaaa
caactgcgcggcaacatctatctggccaaggtcacccgggtcgaaccgtctctacaagct
gcgtttatcgagtacggaggaaaccggcacggtttcctggcgttcagcgaaatccatccc
gactattatcaaattccggtcgccgaccgtcaggcgctgatcgaggcggacgagcgggcg
caccgcgaggccgaggaggagtccgaagatcgctccagccgccgtcgttcgcggcatcgc
aacgcccgccggcgcgatcatggcgaacgcgtgcaaagcgccgttgtcgagaacggggag
catcaggtcgcgggcgcggacgggacgcaatccgacccgtcgcattccgacccgtcgcat
gatgaattcgcggctggcgaccacctcgggcaacagcacgacgtacaggatcacgatcag
ccgaacgatccggatcaccatcatctggatgatgacgatcattcgcacgagtctggatca
atctcgttatacggctccgactacgaaaccgtcgcggaccacctgccggagtccccggac
ttcgctttcgccgctgattccgataatggggatcacgagcaagacgaaaatcaggaggat
accggtgacgatcaggttgccgcgtcttcggaagaggatttgccctcgatagcgccgcat
gacgcggtcggctcggagccttctgctgacgacggcgcccgggacgatcaggtcgaaccg
gcgatatcttcctctccgaatgaggatcatgcgctcggcgtacatgcgagcggtgatcac
gaccacgacgagcctcatgccgaagaatttcatggggatgaggtccgtgtcgaagatcgc
gccgatgatgatggcgacgatgacgaagaagaggagcaggtcgaatccgtcggcggcgat
gatgctctcgaggaagtgccggagcgggcgttccggccgcgccgtcagtacaaaatccag
gaagtcatcaagcgccgccaggtcatgctggtgcaggtcgtcaaggaggagcgtggcaac
aagggcgcggcgctgacgacctatctgtcgctggccggccggtatgccgtgctcatgccc
aataccgcgcgcggcggcggcatcagccgcaagatcacctcggcgcaggaccgttcgcgg
ctcaaggaagtggtccaggacctcgatgtccccgagggaatgggagtcatcctgcgcacc
gccggcgctgcgcgcaccaagccggagatcaagcgcgacttcgagtatctgatccgcatg
tgggaaaccgtgcgcgatatgaccctgcggtcccaggcgccgacgctcgtttacgaggaa
ggctcgctgatcaagcgctccctccgcgatctctacagcaaggaaatcgacgaaatcctg
gtggccggtgaagccggctatcatgaagcgcgcggtttcatgaagatgctgatgccttcc
aacgccagggccgtgaagcagtatcgcgactgccagcccctgttttcgcggatgggcgtc
gagagccagctggacgcgatgtttctgccgacggtgcagcttcgctccggcggatatatc
gtcatcaaccagaccgaagcgctggtgtcgatcgacgtcaactcaggccgctcgacccgc
gaacatcacatcaaggacaccgcgctcaagaccaatctcgaggctgccgaggaagtcgcc
cggcagttgcggctgcgcgatcttgccggcctgatcgtcatcgacttcatcgacatggac
gagaagcgaagcaaccgcgcggtggagcgtaagctcagcgagtgcctgcgccacgatcgc
gcgcgcatccaggtcggtcgaatttcgcacttcggtcttctggaaatgtcgcgccagcgc
attcgcgccagcatgctggaaagctcgacggagccctgcccgcaatgcggcggcagcggc
catgttcgctcggtaccctcggtggcgctacagttgttgcgcagcctcgaggaagttctg
atgaaaggcgcgacgcacaaccttatcgtacggacgcgcatcaacgtcgcgttgtatgtg
ctcaatcagaagcgcgagcatctgcgcgccctggagcacagcttcagggttggtctctcc
gtggtcgccgaccccgcgatcgcgggtcagcagtccttcgtgattgatcgcggcgagcag
gtgcataccctggaggccgcaaaagcgctattggcgacacaactcgtcacatacccgcca
caagctgaggatgttcaggacgacgaaccgacgctggatacggagaccgagaccgaggcc
gatgacgccgaagttcgcgtcgatgagcaggcaggcggtgagaccgagggtgacggccgc
aagcgcaggcgacgccgtcggcgtgaacgctccagcgaaacgaacgacagccaggtctca
caagcggtcgaggttccggacagcgtccagattgccgccgagttcgccgccgcgcgcttc
atgatcgacgacgtcgagaatgagggagaggactcttcggcgcaggagagcgcggcgcca
gccgatcagcctgcggacgaacgccgcccgcgacggcgcgggcgtcgcggcggacgccgg
cgccgcggcaccaacggtgcgaatcctgtcgattcggcttccgacgaactgaacgtcact
tcggtatcggaagccgtcgacgctgtcgcggacctcgattccgtgtcgctggcgccggaa
gcgcggagcgaaccggctgaatctgaaactcagccacagcagcagagcgaagagtcggcg
agttccccggctgaaaccggaaacggcaccgttccggagcccgagaaagctgtttgccgt
cgctcgacggtgcgtgagaaggtgagcttcacctcgcaggaagaaccgccttccgttccg
gtcgttcaaggcgagccggaagagtcgacgcccgaggcgcaacagcctccgcaagcatcg
gacgaaacccggccgcgccgcgccggatggtggtcgcgccggttcggtggcggcacctga
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