Nocardia wallacei: NWFMUON74_10310
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Entry
NWFMUON74_10310 CDS
T07034
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nwl
Nocardia wallacei
Pathway
nwl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
NWFMUON74_10310 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwl03400
]
NWFMUON74_10310 (mfd)
Enzymes [BR:
nwl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
NWFMUON74_10310 (mfd)
DNA repair and recombination proteins [BR:
nwl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
NWFMUON74_10310 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
LSDAT_prok
AAA_22
MFD_D3
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BCK53259
UniProt:
A0A7G1KH16
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All DBs
Position
1127985..1131602
Genome browser
AA seq
1205 aa
AA seq
DB search
MPTHRPPLAGLAAVAGTDAALSQVRSLIGRSPVQLVAPSAVRPFVAETIARQRPLVVVTA
TGREADDLTGELAEILGDGVALFPSWETLPHERLSPSADTVGRRLQVLRRLAHPEDPVYP
EPLRVVVTTVRSLVQPMAGGLGDIEPIVLRAGIEHDFDELTTRLVEFAYERVDMVGKRGE
FAVRGGILDIFPPTADHPVRVEFWGDEVTELRPFSVADQRSLPEVDVDVVVAQPCRELLL
TSDLRVRAAEVAAANPADAALVEMLTKLAEGIPVEGMEALLPALRPGDLQLLTDVLPAET
HVLLCDPEKIRTRAADLVRTGQEFLEASWTAASFGGAAPLGAHGLDLAASAYRGLDVVHA
SADARGLPWWTLSPLASDDPAEVTLPVLAAPAARGSEELVATVFASLRAHVSTGGRAVVV
VAGHGTAQRIRERLADAEVPAAPMDPGAEPVPGVVGVLCGSLHDGVVFEDAKLVVIAESD
LTGNRVTAPGEGKKLPARRRNQVDPLALSAGDLVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPGKRGQPGDRLFVPMDSLDQLSRYVGGEMPGLSKLGGSDWANTKRKARKAVREIA
TELVQLYAARQAAPGHAFGPDTPWQQEMEDAFAFTETVDQLTAIAEVKSDMEKPVPMDRV
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFMERVAGFPVTVKGLSR
FTDPAESRQVLDGMAAGDVDIVVGTHRLLQTGIRWKELGLVIIDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGSYNDKQVAAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDTLEKTVQGFWEREYDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPDKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITTEEEVKEVRIDLPVDAHIPPDYIASDRLRLEAYRKLAAAQDDSALAGVV
EELVDRYGPLPVEVGRLVSVAKLRLLCREYGLTEVGVSGTTLKLSPLQLPDSKQLRLKRL
YPNATYRPTTSIVQLPLPRVEDSVGAARVRDVQLLQFIADLLLALHGKPQGTVDLRVAAE
VSAAR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgcccacccatcgcccacctcttgcgggactggccgcggtggccggtaccgatgccgcg
ttgtcgcaggtccgcagcctgatcgggcgatcgcccgtgcagctggtggcgccgtcggcg
gtgcggccgttcgtggcggagaccatcgcgcggcagcggccgctggtggtggtgaccgcg
acggggcgcgaggccgacgatctcaccggtgaactcgccgagattctcggtgacggcgtg
gcgctgttcccctcgtgggagacgctgccgcacgagcggctctcgccgagcgccgacacg
gtcggccgccggttgcaggtgctgcgccggctggcgcacccggaggacccggtctatccg
gagccgctgcgggtggtcgtcacgacggtgcgctcgctggtacagccgatggccgggggt
ctcggcgacatcgagccgatcgtgctgcgcgcgggcatcgagcacgacttcgacgaactg
accacgcgcctggtcgaattcgcgtacgaacgggtcgacatggtcggcaagcgcggtgag
ttcgccgtgcgcggcggcattctcgacatcttcccgccgaccgccgaccacccggtgcgc
gtggagttctggggtgacgaggtcaccgagctgcgcccgttctcggtggccgaccagcgc
tcgctgcccgaggtcgacgtggatgtcgttgtggcgcagccctgccgggaactgctgctg
accagcgacctgcgggtgcgcgcggccgaggtggccgccgcgaacccggccgacgccgca
ctggtcgagatgctgaccaagctggccgagggcatcccggtggagggcatggaagcgctg
ctgccggcgctgcggcccggcgatctgcaattgctcaccgacgtgctgcccgcggaaacc
catgtgctgctgtgcgatccggagaagatccgcacccgtgccgccgacctggtccgcacc
gggcaggaattcctcgaggcgtcgtggacggccgcgtcgttcggcggcgcggcgccgctg
ggcgcgcacggactcgatctggccgcctcggcctaccgcggtctggatgtcgtgcacgcg
agtgccgacgcgcgcggcctgccctggtggacgctgagcccgctggcctccgacgacccc
gccgaggtcacactgccggtgctggcggcaccggcggcacgcggctcggaggagttggtg
gcgacggtcttcgcgtcgctgcgcgcgcacgtgtcgaccggtggtcgcgcggtcgtggtg
gtcgcggggcacggtacggcgcaacgcatccgggagcgactcgccgatgcggaggtcccc
gccgcgcccatggatccgggcgccgagcccgtgccgggtgtggtcggcgtgctgtgcggc
tcgctgcacgacggcgtcgtgttcgaggacgcgaaactggtcgtcatcgccgagtccgat
ctgaccggcaaccgggtcaccgcgcccggcgagggcaagaagctgcccgcgcggcggcgc
aaccaggtcgacccgctggcgctgtccgccggtgatctggtggtgcacgaccagcacggc
atcggccggttcgtggagatgatcgagcgcaccgtcggcggcgcgcgccgggaatacctg
gtgatcgagtacgcgcccggcaagcggggccagcccggggaccggctgttcgtgccgatg
gactcgctcgatcagctgtcgcgctacgtcggcggcgagatgccgggcctgtccaagctc
ggcggctcggactgggcgaatacgaaacgcaaggcgcgcaaggccgttcgcgagatcgcc
accgaactggtgcagctgtacgcggcccggcaggcggccccgggccacgccttcgggccc
gacacgccgtggcagcaggagatggaggacgccttcgcgttcaccgagaccgtcgatcag
ctcaccgccatcgccgaggtcaagtccgatatggagaagcccgtcccgatggaccgcgtg
atctgcggcgacgtcggctacggcaagaccgagatcgcggtgcgcgcggcgttcaaggcg
gtgcaggacggcaagcaggtcgcggtcctggtgcccacgacgctgctcgcccagcagcat
ctgcagacgttcatggagcgggtcgcgggcttcccggtgacggtgaaggggttgtcccgg
ttcaccgatccggccgaatcgcggcaggtgctggacggcatggccgccggtgatgtcgac
atcgtcgtgggcacgcaccgcctgctgcagaccggcatccggtggaaggaactgggtctg
gttatcatcgacgaggaacagcgtttcggcgtggagcacaaggagcacatcaaggccctg
cgtacccacgtcgacgtgctgaccatgtcggccaccccgatcccgcgcaccctggagatg
agcctggccggtatccgcgagatgtcgaccatcctcaccccgcccgaggagcgccacccg
gtgctcacctacgtcggctcctacaacgacaagcaggtcgccgcggccatccgccgcgag
ttgctgcgcgacggtcaggtgttctacgtgcacaaccgggtgtcgtcgatcgacaaggcg
gccaagcggattcgcgatctggtcccggaggcgcgggtggtggtcgcgcacggccagatg
aacgaggacacgctggagaagaccgtgcagggcttctgggagcgcgaatacgacgtgctg
gtgtgcaccacgatcatcgagaccgggctggacatctccaacgccaacaccctgatcgtg
gaacgcgccgacgcactgggactttcgcagctgcaccagttgcgtggccgggtggggcgc
agtcgtgagcgcggctacgcctacttcctctatccgccggacaagccgctcaccgagacg
gcctacgaccggctggcgaccatctcgcagaactccgacctgggcgccggtatggccgtg
gcgatgaaggacctcgagattcgcggcgccggaaacgtcttgggggccgagcagtccggg
catgtcgcgggtgtcggcttcgacctgtatgtgcggctggtcggcgaggctgtggaggcg
tatcgggcggccgcggacgggcggccgatcaccaccgaggaagaggtcaaggaggtgcgg
atcgacctgccggtggacgcgcacatcccgccagactacatcgccagcgaccggttgcgg
ctggaggcataccgcaaactcgctgccgcgcaggacgattcggcgctggcgggcgtggtg
gaagaactcgtcgaccggtacggcccgctgccggtggaggtcgggcggctggtgtcggtg
gccaagttgcgcctgctgtgccgcgagtacgggctcaccgaggtgggggtcagcggcacc
acgctgaagctgtcgccgctgcagctgcccgactcgaaacagttgcggctcaagcggttg
tacccgaacgccacctaccggcccaccacctcgatcgtgcagctgccgctgccgcgggtg
gaggacagcgtcggcgcggcccgggtgcgcgacgtgcagctgttgcagttcatcgccgat
ctgctgctggcgctgcacggaaagccgcagggcacagtcgatctgcgggtcgcggccgag
gtgtcggcggcgcgatga
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