Nitrosococcus wardiae: E3U44_03025
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Entry
E3U44_03025 CDS
T05933
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3U44_03025 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwr03019
]
E3U44_03025 (rhlB)
Enzymes [BR:
nwr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3U44_03025 (rhlB)
Messenger RNA biogenesis [BR:
nwr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3U44_03025 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QBQ53591
UniProt:
A0A4P7BUT2
LinkDB
All DBs
Position
complement(619572..620867)
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AA seq
431 aa
AA seq
DB search
MSNPHFSEISFDALNLAKPLVQGIQDAGFTVCTPIQALTLPLLLAGKDIAGQAQTGTGKT
AAFLLATMQYLLRNSDTEQGQQQQPRALILAPTRELAIQINKDAQLLGRHTGLRCIVVYG
GANYRKQRRLLEQGCDILIGTPGRLIDYYKQQIVGFKKVRVVVLDEADRMFDLGFIRDIR
YILRRLPPPDKRLGMLFSATLSLRVTELAYEHMNNPRLVQTESQKVTADKIKEKVYFPAN
EEKIPLLLALLKRLAPQHAIVFVNTKHVAEQVWGYLEGNGFKAALLSGDVPQSKRQRLLK
EFQEGSYPILVATDVAARGLHIPTVTHVFNYDLPQDPEDYVHRIGRTARAGASGSAVSFA
CEDYAFSLPDIEEYIGHKLASFSVDDEELATPKQPVLLSPRSHKNPRKGERHSRQKRGSR
KGSRLAGRNRI
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatcctcacttttctgaaatttcatttgacgccttaaatctggctaagccccta
gtacagggaattcaggatgccgggtttaccgtttgtacgccgatccaggcattgacattg
cctttactactggccggcaaggatatagcggggcaggcccagacgggaacgggcaagacg
gctgcctttttgctggcgacaatgcaatacttgttgagaaattctgataccgaacaaggt
caacagcaacagccccgggcgctaattctggcccccactcgtgaattggccattcagata
aataaggatgcccaactactcggccggcatacgggtttacgatgtattgtggtctatggt
ggagctaattaccgtaaacaacgccgcctcctagagcaaggctgtgatatcttgattggt
acaccgggacgcctcattgattattacaaacagcagatagtcggttttaagaaggtccga
gttgtcgttttagacgaggccgatcggatgtttgatctaggttttattcgggacattcgc
tacattttgcgccgcctgccgccacccgataaacgacttgggatgttgttctcggccacc
ctttccctgcgagtgacggaactggcttatgagcatatgaacaatcctcgcttggtccaa
acagagtcgcagaaggtaaccgcagataaaattaaagaaaaagtttattttcctgctaat
gaggaaaaaattcctctattgcttgccctccttaaacgcctagcgccccagcacgcgatt
gtatttgtgaatactaagcatgtcgctgagcaagtctggggttatttggaaggtaatggt
tttaaagctgctttgctttctggtgatgttccccagagtaaacgtcagcgcctgctcaag
gaattccaagagggaagttatcccattttggttgccacggatgtggcggcacgtggtctt
catatccccacagtgactcatgtgttcaactatgatttacctcaggacccggaggactat
gtgcatcgcataggtcgtactgcgcgcgctggagcgagtggttcggcagtaagttttgcc
tgtgaggattacgccttttccttgcctgatattgaggaatatattggccataagttggct
tctttttcggtagacgatgaggaattggccacaccaaaacaaccggtattgttatcccct
aggagccataaaaatcctcgaaagggggaacgtcattcccgccagaagagggggtcccgg
aaaggaagtcgtttagcgggcagaaatcgcatttag
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