Nitrosococcus wardiae: E3U44_05050
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Entry
E3U44_05050 CDS
T05933
Symbol
uvrA
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
E3U44_05050 (uvrA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nwr03400
]
E3U44_05050 (uvrA)
DNA repair and recombination proteins [BR:
nwr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E3U44_05050 (uvrA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
E3U44_05050 (uvrA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
ABC_tran
AAA_29
SMC_N
UvrA_DNA-bind
AAA_21
AAA_16
nSTAND1
AAA_22
ATPase
nSTAND3
AAA_18
AAA_33
AAA_25
RsgA_GTPase
NACHT
Viral_helicase1
MeaB
DnaJ_CXXCXGXG
DUF4350
DO-GTPase2
Motif
Other DBs
NCBI-ProteinID:
QBQ53948
UniProt:
A0A4P7BVB2
LinkDB
All DBs
Position
1032215..1037776
Genome browser
AA seq
1853 aa
AA seq
DB search
MSKGFIWVKGARQNNLQGLNLKFPLNELIVITGVSGSGKSSLAFDTIYAEGQRRYVETFS
PYARQFLDRMDKPQVDRIEGIPPAIAIDQTNPVRTSRSTVGTMTELNDHLKLLFARAGKL
YCQGCGQPVRRDTPDSIYDQLLDQGMGLRALMTFEIAVPPNFSPQEVKEQLLRQGYTRFH
HQNDQVLEVIQDRLRLEPSQRERIVEALETALKYGRGRLAVYPLDEDRQPQPPWRFSSDL
HCPQCDLAYRDPFPNLFSFNSPLGACETCRGFGRTMGIDYDLVVPDDRKTLAEGAIKPWQ
TASYEECQQDLMRFARPRGIPTQRPWRELTSDQQRWVLEGEGEWEENKWYGVQRFFDWLE
GKSYKMHIRVLLSKYRAYHLCPACHGARLKPESLLWRLGTKADADRVLPERQRFKPSGVQ
FSQPQLAALPGLTLHDVMRLPLERCRQFFTQLTLPAPLDQAAELLLGEIRSRLNYLVEVG
LGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLDEPSIGLHARDLQRIIRVLQRL
RDGGNSLIVVEHDPQVMLAADRVLDLGPGPGERGGQRVFFGPPQELLHAKNSLTAQYLVG
KKQVVTEPSRVGKPPATASMEILGATENNLKNITVRFPLNRLVCVTGVSGSGKSTLVQEV
LYKGLRKLKGKPVGIPGRHQALQGHGPIQGVVLVDQSPIGKTARSNPVSYVGALAGLRKA
FAAEPLAQERGYSAGTFSFNSGNGRCPTCGGSGFEQVEMQFLSDVYLRCLDCNGQRYRPE
ILEVKLQPSAHSPGKSIAEVLEMTVAEALEFFADYPEVTRGIEPLQAVGLGYMKLGQPVP
TLSGGEAQRLKLAGHLAKGRGRKEAHRTLFLFDEPTTGLHFDDMATLLQAFQRLLAEGHS
LVVIEHNLEVIQAADWVIDLGPEGGEAGGEVIAVGSPQEVVQFQGSHTGQALQDHAQALN
LITLTTPVIGEVPSAYGAAPQEQAREEGKGVIGIHNAREHNLKGIELQIPRERFTVITGI
SGSGKSTVAFDILFAEGQRRYLESLNAYARQFVQPAARPDLDAIFGIPPTVAIEQRTSRG
GLKSTVATLTEIYHFLRLLFVKLGQQHCPDCGIPIEAQTLEAIQARILRNYRGRRLSVLA
PLVVARKGYYTDLAKWAAAKGFTHLRVDGILVPTDPWPRLDRFKEHSIELPVGEIKVTPG
EEKVLGTLLERALSLGQGRVEILLPKKGEKTLYSTKRSCPSCSRSFGELDPRLFSFNSPQ
GWCPRCYGTGQVLPGFDGSQTGEEKEWAVGEENSARICPACQGRRLRPEALAVYFQERNI
AEFTEMSVAAAETTFRSMELQGREAAIARDLLPELRSRLKFLQEVGLSYLTLDRAAPTLS
GGEAQRIRLASQLGSNLRGVCYILDEPTIGLHPRDNKMLLNTLGKLEGKGNTIVVVEHDE
DTIRRAEHVIDLGPGAGVNGGRVVAAGTVEALLHHPESVTGRCLAHPLLHPLMEKRRSET
AECQLELQGASLHNLKHLDLCLPLGRLVGVTGVSGSGKSTLVRQVIHGNLQRLLGAKGKT
QGKNAAFQGCAGIRGWEAIQRVLEVDQTPIGKTPRSCPATYVGFWDSIRRLFAETPEARI
RGYGPGRFSFNTKEGRCPECEGQGVKKIEMSFLPNVTVPCEVCHGARFTPETLMIRYKDK
HIGEILAMSVDEATEFFSAHVRIHRPLQLLQAVGLGYLSVGQPSPTLSGGEAQRIKLVTE
LAKARSTPGRAGNHHTLYLLDEPTIGLHMADVEKLIRVLHQLVEVGNTVMVIEHNLDIIA
EADWLLDLGPEGGEGGGHVVAQGTPETVAQVKKGSHTAKFLAGFLRERRLKIN
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaaggatttatttgggtcaagggagcccggcagaataatctgcaggggctcaat
ctcaagttccccctcaatgagctgattgtgattaccggggtcagcggttccggtaaatcc
tccctggccttcgacactatttatgccgaagggcaacggcgctatgtggagactttctcc
ccctacgcccgtcagtttctcgatcggatggacaagccccaggtggaccgaatcgagggg
attccaccggccattgccatcgatcagactaatccggtccggacttcccgctccaccgtg
gggaccatgacggagttgaatgatcacctcaagctcctcttcgcccgggcggggaaactc
tactgccagggttgcgggcaaccggtgcggcgggatacgccggatagcatttatgaccag
cttctcgatcagggaatgggtcttcgggctttaatgacttttgagattgctgttcctccc
aacttttccccccaggaggtgaaagagcagctcctgcggcaagggtatacccgtttccac
caccaaaatgatcaggtattggaggtgattcaggatcggctgcgcttggagcccagccag
cgggagcggatcgtggaagccctggaaacggccctcaaatacggccgtggccgccttgct
gtctatcccttggatgaggaccgccagccccagccgccctggcgtttttcctccgatctc
cactgtccccagtgtgatctggcttaccgggaccccttccccaacctgttttcctttaac
tctcccttgggggcctgtgagacttgccggggctttggccggaccatggggattgactat
gacttggtggtgcccgatgaccgtaaaaccctggccgagggagccatcaaaccttggcag
accgcaagctatgaagaatgtcagcaggatctgatgagatttgcccgcccgcgggggatt
cccactcaacggccttggcgcgaactcacttctgaccagcagcgctgggtattagaagga
gagggagagtgggaagaaaacaaatggtatggggtccagcgtttctttgattggctggaa
ggtaaaagctacaaaatgcacattcgggtgttgctgtccaaataccgggcctatcatctt
tgtcccgcctgccacggagcgcgcctcaaacccgaatccttgctgtggcggctgggaacc
aaagccgacgccgatagggtgttgccggaaaggcaacggtttaagccctcaggagtccag
ttttcccaaccgcaattggcggctttgccgggcttgaccctccatgatgtgatgcggctt
cccctggagcgctgccggcaattttttactcagctcaccctgcctgcccccttggaccag
gccgccgaattgctgctgggggaaattcgctcccgcctcaattacctggtggaggtgggg
ctgggctatctcactttggaccggcaatcccggaccttaagcgggggagaggtgcagcgg
atcaatttgaccaccgccctgggcacctccctggtcaataccttgtttgtcttggatgag
ccgagcatcggtttgcacgcccgggacttgcagcggatcatccgggtgctgcaacggctg
cgggatgggggcaattccctgattgtggtggagcacgatccccaagtaatgctggccgcc
gaccgggtgctggacttgggaccggggccgggggagcggggcggccagcgggtgtttttc
ggccctcctcaagaattgttgcacgccaagaactccctcaccgcccagtatttggtgggc
aaaaagcaggtggtgaccgagcctagccgcgttggaaagcccccggccacggcctcgatg
gagattctgggggccacggaaaacaatctcaaaaacattacggtccgttttcctttgaac
cgcctggtgtgcgtgacgggggtcagcggctcgggcaaatccaccctggttcaagaggtc
ctatacaagggattgcggaaacttaagggcaagccggtgggcattcccggccgccatcag
gccctccagggccatgggccgatccagggggtggtgctggtggatcaatctcccattggc
aaaaccgcccgctccaatccggtcagctacgtgggggccttggcgggtctgcgcaaagcc
tttgccgccgagcccttagcccaggagcggggctatagcgccggcacctttagtttcaac
agcggcaatgggcgctgtcccacctgtggcggcagtggctttgaacaggtggaaatgcag
tttctcagcgatgtctatctgcgctgcctcgattgcaacggccagcgttaccggccggaa
atcttggaagtcaaactgcaaccttcagcccatagtccggggaagtctattgctgaggtg
ctggagatgacggtggccgaggccctggagttttttgcggattatccggaggtgacacgg
ggaatcgaaccccttcaggcggtagggctcggttacatgaaattgggccagccggtgccc
accttgagcgggggggaggcccaacggctgaaattggccggccatttggccaaaggacgg
ggacgcaaggaagcccaccgcaccctatttttatttgatgaaccgaccaccgggctgcac
tttgatgatatggccactttgctccaggccttccagcgtttgctggcggaaggtcattcc
ctggtggtgatagagcacaatctggaggtgatccaggcggcggattgggtgatcgatttg
ggccctgaaggcggtgaggccgggggcgaagtgatcgctgtcggttccccccaggaagta
gttcaattccagggcagccataccggccaagccttacaggaccatgcccaggccctgaac
ttaattactttgacaacgccggtcattggcgaagtcccttcggcctacggggctgcaccc
caggagcaggcaagagaggaagggaagggggttattggcatccataatgcccgggagcac
aatttaaagggcattgaacttcaaatcccccgggagcggttcaccgtcattaccggcatc
tccggttccgggaaaagcacggtggccttcgatatcctttttgccgaggggcaacggcgc
tatttggagtccctcaatgcctatgcccggcagtttgtccaaccggccgcccgccctgat
ctggacgccatcttcggcattccccccacggtggccatcgagcagcggaccagccggggg
ggactcaagagcacagtggccaccctcaccgagatttatcatttcctgcgcttgctattc
gttaaactaggccaacagcattgccccgactgcggcattcctattgaagcccaaactctg
gaggccatccaggcccggattctgcgtaactaccggggccgccgcctgagtgtattggcc
cccctggtggtggcccgcaaaggctattacacggatctggccaagtgggccgccgccaag
gggtttacccatttgcgggtggatggaatattggtcccgacggacccttggccccgcttg
gatcggttcaaggaacattccattgaattgccggtaggggagatcaaagtcacccctggg
gaggaaaaggtgctggggacgttattggagcgggctttgagtctgggccagggaagggtg
gaaattctccttcccaaaaagggggagaagaccctctactctactaagcgttcttgcccc
agttgcagtcgcagcttcggggagctggatcctcgcctgttctcctttaattccccacag
ggttggtgcccccgctgctatggcaccgggcaggtgctgcctggttttgatgggtcgcaa
accggggaggaaaaggaatgggccgtgggggaagaaaattctgctcggatttgccccgcc
tgccaggggcggcgcttacggcccgaagccctggcggtgtatttccaggagcggaatatt
gccgaatttaccgagatgtcggtagcagcggcagagaccacattccggtccatggagctg
caagggcgggaggcggcaattgcccgggatctcctgcccgagttgcggtcccgcctgaaa
tttcttcaagaggtggggttgtcttatttaaccttggatcgggccgccccgaccctcagc
gggggggaggctcagcgcatccgtttggcttcccagctcggttccaacctgcggggggtg
tgttatatcctggatgagcccaccatcggcctccatcctcgggacaataaaatgctcctc
aataccttgggcaaattggaaggcaagggcaacaccattgtggtggtggagcatgacgag
gacactattcggcgagccgagcatgtcattgacctgggaccgggagccggggtgaatggg
ggcagggtggtggccgcgggcacggtggaggcgttgctccatcatccggaatcggttacc
ggacgttgtttggcccatcccttgctccatcctctcatggaaaagcggcgctctgagacc
gctgaatgtcagttggagcttcagggggcctcccttcataacttgaaacatctggatctc
tgcctgcccttgggtcggctagtaggagtgaccggggtcagcggcagcggtaagagtacc
ctggtgcggcaggtgatccatgggaatctacaacggttgttaggtgccaaggggaagacc
cagggcaagaatgctgctttccaggggtgtgcagggatccggggctgggaggccatccag
cgggtgcttgaagtggatcaaacccccattggcaaaacgccccgttcttgtccggccacc
tatgtgggcttttgggactctatccggcgtttgtttgccgagacgccggaagcccgaatc
cggggttatgggccaggtcgattttcctttaataccaaagaaggccgctgtccggaatgt
gagggccagggagtcaagaagattgagatgagttttctgcccaatgtcaccgttccctgt
gaggtctgccatggagctcgctttacccccgaaaccttaatgatccgctacaaggataag
catattggtgagatcctggccatgagcgtagatgaggcgaccgagtttttctccgcccat
gtccgaattcatcggcctttgcagctgctacaagcggtggggttggggtatctcagcgtc
ggccaacccagtcctactttaagcgggggcgaagcccagcggatcaaactagtgacggag
ctggccaaggcccgctctactcccggccgtgccggaaatcaccataccctgtatctcttg
gatgagccgacgattggccttcatatggcggatgtggagaaacttatccgggtcctccac
caactggtggaagtgggcaataccgtcatggtcattgagcataatctggatattatcgct
gaggcggactggctccttgacctgggcccggaagggggcgagggcgggggtcatgttgtc
gcccaaggaacgccggaaaccgttgcccaagtcaaaaaaggttcccatacggccaagttt
ctggctggctttctgcgggaaaggcgcctaaaaattaattaa
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