Nitrosococcus wardiae: E3U44_06710
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Entry
E3U44_06710 CDS
T05933
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3U44_06710
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwr03019
]
E3U44_06710
03009 Ribosome biogenesis [BR:
nwr03009
]
E3U44_06710
Enzymes [BR:
nwr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
E3U44_06710
Messenger RNA biogenesis [BR:
nwr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
E3U44_06710
Ribosome biogenesis [BR:
nwr03009
]
Prokaryotic type
rRNA helicases
E3U44_06710
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
QBQ54229
UniProt:
A0A4P7BYB6
LinkDB
All DBs
Position
complement(1362507..1364021)
Genome browser
AA seq
504 aa
AA seq
DB search
MASSPEALFFDNFAISAPILQAIKQVGYETPTQIQARAIPHLLAGCDLMGQAQTGTGKTA
AFAIPILNRLALARKEPQALVLVPTRELAIQVAEAFQTYARYLEDFCVLPIYGGQSMGNQ
LRQLKRGVHVIVGTPGRIMDHLRRKSLLLDKLATVVLDEADEMLKMGFIEDVEWILGHMP
TERQTALFSATMPSSVRHIASRHLHNPHDIKIKGQTASLPTINQRYCLVSDLHKLDALTR
MLEVEEYDATIIFVRTKIATEELAKKLSARGYAAAALNGDMAQAQREKVIGQLKKNALDI
IVATDVAARGLDVKRISHVVNYDIPYDTGTYIHRIGRTGRAGRTGTATLFVAPRERRMLS
AIKKVTGQPLYEMPLPSHQQIIDRRIEQFKQQIMGTLEREDLATFRHLLQQWIEQENLSA
LDVAAALTYSMQRERPLAGPPLEESAIHDKTLHKPVKKKAKKMAALKATRRSEAKSKKFH
KKTVKKRKDFRHSYLNNTHHPSTP
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttctccagaagccctattttttgataactttgctatcagcgctcctattcta
caagccatcaaacaggtaggatatgagacccctacccagattcaagcgagggcgatccct
catcttttggcaggctgtgacctaatggggcaggcccaaaccggcactggcaaaaccgca
gcgtttgccatccctattttgaaccgactggcattggcgcggaaagagccccaagcactg
gtcttagttccaacgcgggagctagccattcaagtggcagaggcatttcaaacgtatgct
cggtatctggaagacttttgtgtccttcccatttacggcggccaatccatgggaaatcag
ttacgccaactgaaacggggcgttcacgtgatcgtgggtaccccaggcaggatcatggat
cacctgcggcgcaaaagcctgttactagataaattggcgacggtggtcttagacgaagcc
gatgagatgttaaaaatgggattcatcgaagatgtggagtggattttaggacacatgccc
acggagcggcagacggcacttttttccgcaaccatgccaagttccgttcgtcatatcgca
agccgccatttgcataatccccatgatattaaaatcaaggggcaaaccgcgtctctccct
accatcaatcagcgctattgtctggtttccgatttacataaattagatgctctcacccgg
atgctagaggtggaggaatatgatgccacaattatctttgttcgcaccaaaatagcgacg
gaggaactggcaaaaaaattgtcggcacggggttatgcggcagcagcactgaatggggat
atggcccaggcacagcgggaaaaagtcatcggtcaactcaaaaaaaatgctctcgacatc
attgtcgccactgatgtggctgcccgtggcttggatgtgaagcgaatcagccatgtcgtc
aattacgacattccctacgataccgggacttacatccaccgtattggccgtacgggtcgc
gcaggccgcaccgggacagcaaccctgtttgttgccccccgcgagcggcggatgttgagc
gctatcaaaaaggtaacgggacaacccctttatgaaatgccactacccagtcaccagcaa
atcatagaccggcgtattgaacaatttaagcaacagattatgggaaccttggaaagggaa
gatttggctacattccgccacttgcttcaacaatggattgaacaggaaaatctctccgcg
ctggatgtggccgcggcattgacctattccatgcaacgtgaacgtccgttagcagggcct
ccattagaggaatcggctattcatgacaaaacactccataagccggttaagaaaaaggcc
aaaaagatggccgctttaaaggcaacaagaagaagtgaggcaaaaagcaagaaattccat
aaaaagacagtgaaaaaacgaaaagattttcgtcattcttatctcaacaatacccaccac
ccttccactccctaa
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