Nitrosococcus wardiae: E3U44_07070
Help
Entry
E3U44_07070 CDS
T05933
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
E3U44_07070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwr03019
]
E3U44_07070
03009 Ribosome biogenesis [BR:
nwr03009
]
E3U44_07070
Enzymes [BR:
nwr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
E3U44_07070
Messenger RNA biogenesis [BR:
nwr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
E3U44_07070
Ribosome biogenesis [BR:
nwr03009
]
Prokaryotic type
rRNA processing factors
E3U44_07070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QBQ54295
UniProt:
A0A4V1AVT9
LinkDB
All DBs
Position
1442037..1444394
Genome browser
AA seq
785 aa
AA seq
DB search
MKRMLINATHAEELRVAMVDGQHLQDLDIENPTREQKKANVYKGKITRVEPSLEAVFVDY
GADRQGFLPLKEVARGYFQPYQGEPGERLKVQEVLKEGQELLVQVEKEERGNKGAALSTF
VSLAGRYLVLMPNNPRAGGVSRRIEGEERGALLEAMRALEVPEGMGLIARTAALGKSTEE
LQWDFNYLLHLWQAIRVAAEERSAPFLIYQESDVIIRALRDYLRLDVGEILIDTPDVYQR
AYDFMRQVMPHELHRLKLYQDKVSLFTRFQIESQIETAFQHEVELPAGGAIVIDYTEALT
TIDINSARANKGEDIEETALSTNLEAAEEIARQLRLRDLGGLIVIDFIDMAPLRNQRAVE
NRLRECLREDRARVQVGRISRFGLLEMSRQRLRPSLGEAHQVVCPRCSGRGYVRGIESLG
LSVLRLVEEGAAKEKTARMVVQLPISVASFLLNEKRSNLATIERRYGVHLFLVPNPHMET
PAFKIERIKEKGKEEGRADKRLEMQSYQMANEPESKNLVFATPSIAPDEPLVKGVSPSLP
PPGLQSAAPAAQPNFLRHFWKVLVGGDQEPAASEVSNQETATAHGESNKQEHVASRRGRS
HGRGRRGSGRKQNRRENSQGKEASLEVESVQSVPEAKETQDKQKVGGNTSPRTATRGRRG
GRRSRSSAANRHRHSSSGSRSDGSAVKQPKETGNAEKKPALSSEVKDTPSKLPPETAASG
GKKASSEERQSGGSQDSISSGPGKVVAANERAVVATEVPKLPAPISIVEEQTPMLPHSVR
KESSG
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctgattaatgcaactcatgcggaagagttgcgagtggcgatggtcgat
ggccagcacttgcaagatttagatattgaaaatccgactcgggaacagaaaaaagccaat
gtttacaagggcaaaattactcgggttgaaccaagtttagaggcggtattcgtcgattat
ggtgctgatcgccaggggtttttacccctcaaggaggtggcgcgcggctattttcagccc
tatcagggagaacctggggagcggctcaaagtccaagaagtgctcaaggaagggcaagag
ttactcgtccaggtagaaaaagaagagcggggcaataaaggggccgcgctttctacattt
gtgagtttggcggggcgatatcttgtattgatgcccaacaaccctcgggctggaggggta
tcacgtcggatcgaaggggaagagcggggcgcgcttttagaagcaatgcgtgctcttgag
gtgcctgagggcatggggctcattgctcggactgctgctctgggtaaaagtacggaagaa
ttgcaatgggatttcaattatttgcttcatctttggcaggctatccgggttgccgctgaa
gagcggtcagcgccttttcttatctatcaggaaagtgatgtcattattcgcgcattacgg
gattacctacgcctagatgtgggcgagatcctgattgacactccagatgtctaccagcga
gcctatgatttcatgcggcaagtgatgccccatgagttgcacaggcttaagctctatcaa
gataaggtttccctgttcacccgttttcaaattgagagccaaatcgagactgcattccag
catgaggttgagttacctgccggtggtgcaatcgtcatcgactatactgaggccctgacc
accatcgatatcaattcagcgcgggcaaataagggcgaggatattgaggagacggctctt
tcaaccaacttagaagcggctgaagagatagcacgccaattaaggttgcgtgatttgggg
gggttgattgttatcgattttattgatatggcgccactacgtaaccagcgggcggttgag
aatcggttgcgggagtgcttgcgtgaggatcgggcgcgggtacaagtgggtcgcatttcc
agatttggacttctggagatgtcacggcaacggttgcgaccgtctctgggggaagcccat
caagtggtttgcccgcgttgtagcggtcggggttatgtgagggggatagaatccctaggg
ctatcagtcttgcgtcttgtcgaagaaggggcagccaaggaaaagactgctcgcatggtg
gtccaacttcccatttcggtggcctccttcttgctcaacgagaagcgatctaatcttgct
actattgaaaggcgatatggggtgcatttgtttttagtgcctaatccccatatggaaacc
cctgctttcaaaattgagcgtattaaggagaaaggaaaagaggaggggcgagcggataaa
cggcttgaaatgcaaagctaccagatggcgaatgagccggagtctaaaaatctggtgttt
gccacacctagcattgctccggatgaacctttggttaaaggggtttctccttcgcttcct
ccgcctggactgcaatcagcagcgccggcagctcagcctaactttttaaggcatttctgg
aaagtgcttgtcgggggcgaccaagaaccagcagcctctgaggtatcgaaccaagagacc
gcaacggctcatggagagtcgaataaacaggagcatgtggcttctcgccgtgggagatcc
catggtaggggacgccgcggttcaggtcggaaacaaaatcgcagggaaaatagccagggg
aaagaggcttctctagaggtcgagagcgttcaatcggtcccagaagccaaggaaactcag
gataagcaaaaagttggggggaatacttcaccgaggacggctacccgggggcgacggggg
gggcgtcgttctcgctccagtgcagcgaacaggcaccgtcacagcagcagtgggagtaga
agtgatgggtctgcggtgaagcaaccgaaagaaacgggaaatgctgaaaaaaaacctgcg
ctttcttcagaggtgaaagataccccctcgaagttgcctccagagacagccgcttccggt
gggaaaaaggcctcctcggaggagcggcaaagtggaggttcccaggactcgatatcctct
gggccgggaaaggttgtggcggcgaatgagcgggcggtcgttgccacagaagtgccaaaa
ttgcctgcacccatttccatagtggaggaacagacaccaatgttacctcactcggtgagg
aaggagtcttccggttaa
DBGET
integrated database retrieval system
