Nitrosococcus wardiae: E3U44_09130
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Entry
E3U44_09130 CDS
T05933
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3U44_09130 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwr03021
]
E3U44_09130 (rpoB)
03400 DNA repair and recombination proteins [BR:
nwr03400
]
E3U44_09130 (rpoB)
Enzymes [BR:
nwr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3U44_09130 (rpoB)
Transcription machinery [BR:
nwr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3U44_09130 (rpoB)
DNA repair and recombination proteins [BR:
nwr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3U44_09130 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
Motif
Other DBs
NCBI-ProteinID:
QBQ54653
UniProt:
A0A4P7BX16
LinkDB
All DBs
Position
1878428..1882507
Genome browser
AA seq
1359 aa
AA seq
DB search
MPYSLTEKKRIRKDFGKLYSILKTPFLLATQIESFRDFLQMDAPPNKREDKGLHAAFQGV
FPIKSYTEYAELQYVSYHLGTPSFDVKECQVRGLTYAAPLRVKLRLVIYDKEAPASEQVV
KDVKEQEVYMGEIPLMTPKGNFVINGTERVIVSQLHRSPGVIFEHDKGKTHSSGKLLFSA
RIIPYRGSWLDFEFDPKDCVYARIDRRRKLLATILLRALGYSTEEILMMFFETITVHHQG
SVYLLDLLPQRLRGESLPFDIISPDGEVIVEAERRVTARHIRQMEKAGMETLSAPKEFLI
GKILARDLVDTDTGEVLARANDEITAELMEAIAGADIQSFDLIYTNELDRGPFISDTLRL
DLTTTPLEAQMEIYRVMRPGEPPTKEAAQNLFQNLFFNPERYDLSPVGRMKFNRRLGRED
IVGLGVLSKEDIVDVIKTLIDIRNGYGSVDDVDHLGNRRVRSVGEMAENQFRVGLVRVER
AVRERLSLAESEGLMPQELINAKPVSAAIKEFFGSSQLSQFMDQNNPLSEVTHKRRVSAL
GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYARTNRYGFIETPYRK
VVESKVTGEVEYLSAIEEGQYVIAQANATADEEGRLVDMLVSCRHKNEFTLLPPEKVQYI
DVSPKQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRAETPLVGTGIEKVVARDSG
VMVVARRGGVVDSVDAARVVVRVNDEETAADEPGVDIYNLTKYARSNQNTCINQRPLVKP
GEVVAAGDVLADGPSTDMGELALGQNLLVAFMPWNGYNFEDSILISERVVEEERFTSIHI
EELSCFARDTKLGPEEISSDIPNVSEAALSKLDEAGIVYIGAEVKPGDILVGKVTPKGET
QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMHGTVIDVQVFTRDGVEKDSRALQIEEMEL
AKIKKDLRDEFRIVEADIYQRLEKVLVGKIAEGGPAGLGAGSKITMNYLADLPKDRWFEI
RLRSEEADKQLEWAAGQLKEQRAAMDEKFQQQRAKLTSGHDLPPGVQKMVKVYLAVKRRI
QPGDKMAGRHGNKGVISTIVPLEDMPYMEDGTSVDIVLNPLGVPSRMNIGQILETHLGWA
AKGLGRRIGALLDSRSQVSELRGFLERVYNTSGKKEDLNSLRDEEILELATNLRNGVPMA
TPVFDGASEKEIKAMLELADLPTNGQTTLYDGRTGEAFARPVTVGYMHMLKLNHLIDDKM
HARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALESYGAAYTLQEMLTVKSDDVNGRTK
MYKNIVDGDYRMEAGMPESFNVLTKEIRALGIDIELEQD
NT seq
4080 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcgttgaccgagaagaagcgtattcgtaaagattttggcaagctttatagt
atactgaaaactcccttcttgctagcaacacaaattgaatccttccgtgatttcttacaa
atggatgcgcctcccaataagcgggaggataaagggttacatgcagcatttcagggcgtg
tttcccatcaagagctacacagaatacgcggagctccagtatgtcagttatcaccttggt
actccctcgtttgatgttaaggagtgccaagtacgaggtttgacttatgcggctccactg
cgggttaagttgcgcctggttatctatgacaaggaggctcctgctagcgagcaagttgtc
aaggatgtaaaagaacaagaagtctacatgggggaaattcctttgatgaccccaaaaggg
aattttgttattaacggaacagagcgggttatcgtctcccaattacatcgctctccagga
gtcatttttgagcatgataagggaaagacccattcctcagggaaattacttttctctgct
aggataatcccctatcgcggatcttggctagattttgaatttgatcctaaagactgcgtc
tatgcccgtattgatcgtcggcgcaaattgctagcaaccatattgttacgtgccctgggt
tatagcactgaggaaatcctgatgatgttctttgaaactattacggttcatcaccagggt
tcagtttacctgttagatttgctgcctcagcggctgcgcggtgagtctctgccctttgat
attatcagcccagatggtgaggttattgttgaagccgagcgacgggttacagcacggcat
atcaggcagatggaaaaggcggggatggagactctgtctgcacccaaggaatttttaata
gggaagattctggctcgagatctagtggatactgacaccggagaagtcttggctagagcc
aatgatgaaattacagcagagttaatggaggccatagctggcgccgatatccaatccttc
gatcttatctataccaatgagttagatcgtggcccttttatctctgataccttgcggtta
gatcttaccaccacgcctttggaggcccaaatggaaatctaccgcgtgatgcgtcctgga
gagccgccgactaaggaggcggcacagaatttattccaaaatctgtttttcaatccggaa
cgctacgatctctctccggtggggcgaatgaagtttaatcgtcgccttgggagagaggat
attgttggcctgggggttctatcaaaagaggatattgttgatgtcataaagactttaatt
gatatccgcaacggttatggcagtgtggatgatgttgaccacctgggcaaccgccgagtg
cgcagtgttggtgagatggcggagaaccaatttcgggtaggcttggttcgggtcgagcgg
gcggtgcgggagcgcttaagcttggctgaatcggaagggttgatgccccaggaattaatt
aatgcgaaaccggtatcggcagcgattaaggaattttttggttctagccaactgtcgcaa
tttatggaccagaacaaccctttgtcggaggtaacccataagcgacgggtttctgcccta
gggccaggaggactcacccgtgagcgggcggggtttgaagtgcgtgacgtacatcctacc
cattatggccgggtttgtcccattgagacaccagaaggtccaaatattggtttgatcaat
tccttagcggtttatgctagaactaatcgatatggttttattgagacgccttaccgaaaa
gtagttgaaagcaaggtgaccggcgaagtggaatatctgtcggccattgaggaaggacag
tatgtgattgcccaagcaaatgcgactgctgatgaggaaggccgccttgtggatatgctc
gtttcctgtcgccacaagaatgaattcacgcttttgccaccggaaaaggtgcagtacatc
gatgtgtcacctaaacagattgtatcggtagccgcatctttgatcccctttttagaacac
gacgatgctaatcgtgcattaatgggatctaacatgcaacgccaggcagtacctactttg
cgggcggagacccccttagtggggacgggtattgagaaggttgtggcccgcgattcaggg
gtcatggtggttgcccgccgtgggggtgtcgtggattctgtggatgcagcccgggtggta
gtgcgagtcaatgatgaggaaacggctgctgatgagcccggggttgatatttacaatctc
actaagtacgcccgctcaaatcaaaatacgtgtattaaccagcggcccttggtgaaacca
ggtgaggttgtggcagcgggtgatgtcctggcagatggtccgtcaacagatatgggtgag
ttggctttggggcagaatcttctcgtggcctttatgccctggaatggctataacttcgag
gactcaatccttatctccgagcgagtggtggaagaagaacgttttacttccatccatatt
gaagagttgagttgctttgctcgggacaccaagctaggcccagaagagatcagcagcgat
attcccaatgtaagcgaagcagctctgtccaagctggacgaggcgggtattgtttatatc
ggtgcggaagtcaaacccggtgatattttggtaggcaaggtgactcccaaaggggaaact
caattgacaccggaggagaagctgctacgagccatttttggggaaaaggcttctgatgtg
aaggacacttccctacgggtgccttcgggtatgcatggcactgtcattgatgttcaggtc
tttacccgtgatggtgtggaaaaagactcccgggccttgcagatagaagagatggaatta
gctaaaatcaaaaaggatttgcgcgatgagtttcgtatcgtagaggcagatatctaccag
cgcttagagaaagtattggtgggtaagattgccgaaggagggccggcaggattaggcgcg
ggtagcaagatcacaatgaattatcttgccgatttgcctaaggatcgatggtttgagatt
cgactgcgtagtgaggaagctgataaacagctggaatgggctgctgggcaactaaaggag
caacgggcggcaatggacgaaaagttccagcaacagcgggccaagcttacttctgggcat
gatctgccccccggtgtccaaaaaatggtaaaggtctatttggcagtaaaacgccgtatc
cagccaggcgataagatggctggtcggcatgggaataagggcgtgatttctactatcgtg
cctcttgaagacatgccttatatggaagatgggacctcagtggatatcgtgcttaacccc
ctaggggtgccttctcggatgaatattggccagatcctggagactcatttgggatgggcg
gcaaaaggcctaggtcgaaggattggcgctctccttgattcaagaagtcaagtttctgaa
ttgcgtggttttctggagcgggtgtataacaccagtggcaaaaaagaagacctaaattct
ctgagggatgaggagatattggaactggccaccaacctgcgtaatggtgttcctatggca
acaccggtatttgatggggcttctgagaaggaaatcaaagcgatgctagagctagctgat
ttgcctactaatggtcaaacaacgctgtatgatggaagaacgggagaagctttcgcccgc
ccggtaacggtagggtatatgcatatgcttaagctcaatcacttgattgatgacaaaatg
catgctcggtcgactggcccttatagcttagtcactcagcagcctctgggtggaaaagcc
cagtttggtggacagcgttttggtgagatggaagtatgggccctggaatcctatggcgct
gcctatactttgcaggagatgctcactgtgaaatctgatgatgtgaacgggcgtaccaag
atgtataagaacatcgtggatggtgattaccgaatggaagcgggtatgcctgagtcgttt
aatgtattgacaaaggaaattcgtgccctcggtatcgatatcgaactggaacaggactaa
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integrated database retrieval system
