Nitrosococcus wardiae: E3U44_09135
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Entry
E3U44_09135 CDS
T05933
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3U44_09135 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwr03021
]
E3U44_09135 (rpoC)
03400 DNA repair and recombination proteins [BR:
nwr03400
]
E3U44_09135 (rpoC)
Enzymes [BR:
nwr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3U44_09135 (rpoC)
Transcription machinery [BR:
nwr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3U44_09135 (rpoC)
DNA repair and recombination proteins [BR:
nwr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3U44_09135 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QBQ54654
UniProt:
A0A4P7BZL1
LinkDB
All DBs
Position
1882585..1886796
Genome browser
AA seq
1403 aa
AA seq
DB search
MRDLLNLLKQQNQIEEFDSIRIGLASPDMIRAWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSL
PSRISLLLDMTLRDIERVLYFEASVVIEPGMTPLERGQLLADEAYLQAIEEYGDEFDARM
GAEAVQEMLKTLDLKGEATKLREEITSTNSDTKIKKLSKRLKLIEAFIDSGNRSEWMILE
VLPILPPDLRPLVPLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKLPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFGKLERAGLATTIKAAKKLVEREGPEVWDVLEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAFNADFDGDQMAVHVPLSLEAQLEA
RALMMSTNNILSPANGEPIIGPTQDVVLGLYYMTCERVNAKGEGMLFADVNEVRRAYETA
VVDLHAKVSVRITETDLSKPEDERETTRIVNTTVGRALLSELLPPGLPFELVDRNMTKKE
ISKLVNTCYRRLGLKTTVVFADRLMYLGFRQATLSGISIGVDDMVVPEEKQAILVRAEEE
VKEIEEQYASGLVTNGERYNKVVDIWSHTNDQVAKAMMERLGSEEVQDAEGKVVKQQTFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLDVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVITEDDCGTTRGISMTPLVEGGDVVEPLRERVL
GRVLALEVYVPGSNEVAIPAGTLLDESWVDHLETLGIDAVKVRSPITCETRYGVCAGCYG
RDLGRGHRINVGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRTVTTNSIEIKYKGSIRL
HNVKIVQHESGKYVAVSRSGEVHVVDEQGRDRERYKIPYGAELSVGDGDVVEPGQVVATW
DPHTHPVITEVAGKVRLQDFVEGTTVERQVDEVTGLTSLTVLDPKQRGAAARELRPLVKL
VDETGNDLCLAGTDIPAHYYLPAGAIVSVEDATMVGVGDVLARLPQESSKTRDITGGLPR
VADLFEARKPKDPAVLAEISGTVSFGRETKGKQRLIITGSDGERHEELIPKWRQVNVFEG
EHVEKGEVIVDGPPAPHDILRLRGVEELTQYIVNEVQDVYRLQGVKINDKHIEVIVCQML
RKIEVIEPGDTSFLKGEQVDKARLLEENEKVEKEGKLSARFEPVLLGITKASLATESFIS
AASFQETTRVLTEAAVTGKSDELRGLKENVIVGRLIPAGTGLAYHSERRRKRHILEQSEA
LTGEAGSSRYGEGEISESGAATA
NT seq
4212 nt
NT seq
+upstream
nt +downstream
nt
atgagagatttactgaatttgcttaagcagcaaaaccagatcgaggagttcgattccata
cgcattggtctggcatctcccgatatgatccgggcttggtcatacggagaggtcaagaag
cctgaaaccatcaattatcggacttttaagccggaacgtgacgggcttttttgcgctaaa
atttttggcccagttaaagactacgagtgtttatgcggcaaatataagcgcctcaaacat
cgcggcgtgatttgcgagaaatgtggggtagaggtgactctggccaaagttcgccgggag
cgtatgggacatattgagctggcgagcccagtggctcatatttggttcttaaaatcgttg
ccttcgcggatcagtttacttttagatatgacacttcgcgatattgagcgggttctctac
ttcgaggcttccgtggttattgagccaggcatgactcctttggagcgggggcaactctta
gcggatgaggcctaccttcaagccattgaggaatatggcgatgagtttgatgcccgtatg
ggagcagaagcggtccaggagatgcttaaaacccttgatctcaaaggagaagccacaaaa
ctgcgggaggaaattaccagtacgaactctgacaccaagattaagaagcttagtaaacgg
cttaagcttatcgaagcttttatcgattcaggcaaccgctccgaatggatgattttagaa
gttctcccgattttaccgcccgatttacgacccctggtgcctttggaaggagggcgtttt
gccacctctgatcttaacgatctataccggcgggtgattaatcgcaataatcgtcttaaa
cggctattagatttgaatgcccctgatatcatcgtgcgcaatgaaaaacgcatgctccag
gagtcagtggatgctctcttggataatgggcgtcgcggccgagcgattacggggaccaat
aagctgcctttaaaatcgttagccgatatgatcaaaggcaaacagggacggtttcggcaa
aatctactgggtaagcgggtggattattctggtcgttctgtcattgtggtggggccaacc
cttaagctgcaccagtgtggtttgcccaagaaaatggcactggaactttttaaacctttc
atctttggtaagttggaacgggctggacttgccaccacgattaaggcagcaaagaaactg
gtagagcgggaaggtcctgaggtatgggatgtgttagaggaggtgatccgggagcacccg
gttatgcttaatcgggcccctaccttgcaccgcctgggcatccaggctttcgagccggtg
ctcattgaaggtaaggcgattcagctccaccctttggtttgtgtggcttttaatgctgac
tttgatggcgaccagatggcagttcatgtaccgctgtctttggaggcccagctggaagcc
cgggcccttatgatgtctacaaacaatattctgtcaccggctaatggggagcccattatt
ggtcccacccaggatgtagttttagggctgtactacatgacctgtgagcgggtaaatgcc
aagggtgagggaatgctctttgctgatgtcaatgaagtacgacgtgcctatgagacagcg
gtggttgatctccatgcgaaagtttccgtgcgtattaccgaaacggacctttctaaaccc
gaagatgagcgtgaaacgacccgtatcgtgaatacgacagtgggacgagctctactttca
gagctattgccgccagggctgcctttcgaattagtcgataggaatatgactaaaaaggag
atttctaaattagtcaatacctgttatcggcgcctgggtcttaaaaccacagtagtattt
gctgatcgcctgatgtacctcggattccggcaagcgactctgagtggtatctccattggt
gttgatgacatggtcgtaccagaggaaaagcaagccattctcgttagggcggaagaagag
gtgaaggaaattgaggaacaatacgcctcaggcttagttaccaatggcgagcggtataac
aaagtcgtggatatttggtcccataccaatgaccaagtggccaaggcaatgatggaacgg
ttagggagtgaagaggtgcaggatgcagagggtaaagtcgttaaacaacaaacctttaac
tccatctatatgatggccgattcgggggcccggggatcggctgcccagatccgccagctt
gcaggtatgcggggcttgatggctaagccagacggctcgatcattgaaacgcccattacg
gctaatttccgtgaaggactagatgtattgcagtactttatttctacccatggagctcgt
aaggggttggctgacacagcgctaaaaacggctaattctgggtacttgactcgacgctta
gtagacgtagcccaggacttggtgattacagaggatgattgtggcaccacccgcggaatt
agcatgactccgctggtagagggtggtgatgttgtagagccgttacgagagcgcgttcta
ggccgggtattggcgcttgaggtttatgtgcccgggagcaatgaagtggcgatacctgcc
ggcacgctgctagatgagtcatgggtcgatcatcttgaaaccctcggtattgatgcggtg
aaagtccgttcacctattacctgtgagactcgttatggggtctgtgctggttgttatggt
cgagatctggggcggggccaccgcatcaatgtgggtgaagccattggcgtcatcgcggct
caatccatcggtgaaccaggtacccagctgactatgcgcactttccatattggaggagca
gcatcccgaacggtaaccaccaatagtattgagattaagtacaaaggcagcattcggttg
cataatgttaagatagttcagcacgaaagtggtaaatatgttgctgtctctcgctccggg
gaagttcacgtagtggatgagcaggggcgtgatcgggaacgctataagattccctatggt
gctgagctttcggtgggagatggcgatgtggtggaaccggggcaagtggttgccacctgg
gatcctcatactcaccctgtgattacagaagtggcgggcaaagtcaggcttcaggatttt
gtggaaggcaccaccgtggaacgccaggttgatgaggtcacgggtctgacaagcctcact
gtgctcgatcctaagcaacgaggtgccgctgctagggaattgcgtccgctggtcaagtta
gttgatgaaacaggcaatgacttatgccttgcaggaacggatatccctgcccattattat
ttgccagcgggggccatcgtttcggtagaggatgcaaccatggttggtgtgggtgatgtg
ttagcgcgattgccccaagaatctagtaagacacgtgatatcacgggcggtttgccgaga
gtagccgatctattcgaggcacgcaaaccaaaagatcctgctgtccttgccgaaatttcg
gggaccgtaagttttggtagggaaaccaagggtaaacagcggcttattattacgggcagt
gatggcgaacggcatgaagagttgatccccaagtggcgccaagtcaatgtgttcgagggt
gaacacgttgaaaaaggcgaagtaatcgtcgatggacccccggcgcctcatgacattcta
cgtctaaggggggtggaggagttaactcaatatatcgttaacgaggtccaggatgtgtat
cgcctacaaggagtgaaaattaatgacaagcacatcgaagttattgtttgccaaatgctt
cgcaagatagaagtaatagaacctggagataccagctttcttaagggtgagcaggttgat
aaagcgcgattgttggaggaaaatgagaaggtggagaaagagggcaaattatctgcccgt
tttgaaccggtgctcttgggtatcaccaaggcctcactagcgaccgaatctttcatttcg
gccgcttccttccaggaaactacgcgtgtgcttacagaagcagcagtgacgggtaagagc
gacgagttgcgcggattaaaggaaaatgtgattgtcggccgtttaattcccgcagggacg
ggattagcctatcattctgagcggcgccgcaagcggcatatattagagcaatcagaagct
ttaacaggggaggcgggctcctctcgttatggtgagggcgaaatttccgagtcaggtgct
gcgactgcttga
DBGET
integrated database retrieval system
