Nitrosococcus wardiae: E3U44_09290
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Entry
E3U44_09290 CDS
T05933
Symbol
rpoA
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nwr
Nitrosococcus wardiae
Pathway
nwr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
E3U44_09290 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwr03021
]
E3U44_09290 (rpoA)
03400 DNA repair and recombination proteins [BR:
nwr03400
]
E3U44_09290 (rpoA)
Enzymes [BR:
nwr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
E3U44_09290 (rpoA)
Transcription machinery [BR:
nwr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
E3U44_09290 (rpoA)
DNA repair and recombination proteins [BR:
nwr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
E3U44_09290 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
Helicase_Sgs1
AMP-binding_C_2
Motif
Other DBs
NCBI-ProteinID:
QBQ56515
UniProt:
A0A4V1AWG1
LinkDB
All DBs
Position
1903532..1904530
Genome browser
AA seq
332 aa
AA seq
DB search
MSVSNFLKPRIVDVQRINDYTAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVVEAQID
GVLHEYTTKEGVQEDMTEILLNLKGVAIQLHGRDEVTLTLNSKGPGAVTAGEIQLEHDVE
IINPEHVIAHLTKSGELNITMKVARGRGYQPASVRIPKEEEERPIGYLILDASFSPIRRV
TYEVDSARVEQRTDLDKLIIEIETNGTIASDEAVRKAATILQDQLTAFVELEGKIETAKE
KKAAEIDPVLLQPIDDLELTVRSANCLKAENIYYIGDLIQRTEVELLKTPNLGKKSLTEI
KDVLASRGLSLGMRLENWPPAGLHEEETKASV
NT seq
999 nt
NT seq
+upstream
nt +downstream
nt
atgtcagtatctaattttcttaagcccaggatagtggatgtccaacgcatcaatgattat
acagctaaagttacgctggaaccgctagagcgcggctttgggcatacccttggaaatgcc
ctgcgtcgaattttattatcttcaatgcccggttgcgctgttgtggaagcacaaattgac
ggcgtattacatgagtacaccaccaaggaaggtgtgcaggaggatatgacggaaatcctg
ctgaatctcaaaggggttgcgattcagttacatggccgtgatgaggtgaccttaactctg
aacagcaaagggccgggggcagtaacagcaggggagatacagcttgaacatgatgtggag
attattaatccagagcatgtgatagctcatctcaccaagtctggtgaactcaatattacg
atgaaggtggctcgtggtcgcggttatcagccagcgtccgtgcggatacctaaagaggag
gaggagcgtcctattggatatttaattctggatgcatcctttagtcctattcggcgggtc
acttatgaagtggatagtgcccgggttgaacagcgaactgatttagataaattgattata
gagatcgaaacaaatggtactatagcttcagatgaagcggtacgcaaagctgcgacgatt
ttacaagatcaactcacagcctttgtcgaattagaaggtaaaatagaaactgccaaggag
aaaaaggcagctgagatcgatcctgtactgcttcaacctatagatgatttggaattgacg
gtgcgatcagcaaactgccttaaggcggagaatatttattatatcggtgatcttattcag
aggacggaagttgagttgctaaagactcctaatctaggtaagaaatcattgacggaaata
aaagatgtattagcatcgcggggattgtccttaggtatgcgtttggaaaattggccaccc
gcggggctacatgaggaagaaactaaagcttctgtttga
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