Nitrospina watsonii: NSPWAT_0802
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Entry
NSPWAT_0802 CDS
T08754
Symbol
rpoD
Name
(GenBank) RNA polymerase, sigma 70 (sigma D) factor
KO
K03086
RNA polymerase primary sigma factor
Organism
nwt
Nitrospina watsonii
Pathway
nwt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nwt00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NSPWAT_0802 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwt03021
]
NSPWAT_0802 (rpoD)
Transcription machinery [BR:
nwt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NSPWAT_0802 (rpoD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
CAI2717661
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All DBs
Position
NSPWAT:complement(860215..861978)
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AA seq
587 aa
AA seq
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MSNADKTADVSEINQLISLGKEKGYLTYEEVNDVLPSHLVAPDQIDDLMHLFGENEIDIV
DSALKEDKPSDDDEDAEKEDAAVEENIPEAKAETVSIDDPVRMYLREMGTISLLTREGEV
EIAKRIEDGQNEVLSAVANCSVTIYEVVCLGESVKEGLINVFDVINQGDPDEKKEIDEKE
EAKRLLKAIRNLLTQEKKVFRLRERSQTKLSEKVQEKVDKELSEQQKKLEDMVLDLNLSS
EVMDGIIERIYEIAARFREAGKQERMIEKEIGVSLAEVKKLAKNWAKQKSVKLPSNKVIT
RAQYDKHMKVAQGCRRKIKKIEKETNTAKDQLLATVRTIARGRVKDKTAKRELAEANLRL
VVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQ
ARTIRIPVHMIETINKLIRVSRHLVQELGREPTPEEIAEKMSLPVDKVRKVLKIAKEPIS
LETPIGEEENSHLGDFIEDKKVLSPIDSVVKKNLKEQTLKVLGTLASREEKVLRKRFGIG
LDSEHTLEEVGQDFAVTRERIRQIEAKALRKLRHPSRSKKLRSFIEG
NT seq
1764 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgctgacaaaaccgcagatgtttcggaaatcaaccagctcatctcgctggga
aaggaaaagggctatctcacctatgaagaggtgaatgacgtgctgccgtcacatctcgtc
gcacccgaccagatcgacgatctgatgcatttgttcggagagaatgaaatcgacatcgtc
gattccgctttgaaggaagacaaacccagcgacgacgatgaggacgccgaaaaggaagat
gccgcggtggaagagaacatccccgaagccaaggccgagaccgtgagcatcgacgatccc
gtccgcatgtacctgcgcgagatgggcaccatttcactgctcacccgcgaaggcgaagtc
gaaatcgccaagcgcatcgaggacggccagaacgaagtgctctccgctgtcgccaactgt
tccgtcactatttacgaagtggtctgcctgggtgaatcggtcaaggaaggcctgatcaac
gtgttcgacgtcatcaaccagggcgatcccgacgagaaaaaagaaatcgacgagaaggaa
gaagccaagcgcctgctgaaagccatccgcaatctgctgacacaggagaaaaaagtgttc
cgcctgcgcgagcgcagtcagaccaaactgtccgaaaaggtgcaggaaaaagtggacaag
gaactgtccgagcagcagaagaaactggaggacatggtgctggacctcaacctgagcagc
gaggtcatggacggcatcatcgaaagaatttacgagatcgccgcccgcttccgcgaagcc
ggcaagcaggaacgcatgatcgaaaaagagatcggcgtgtcgctcgccgaggtcaagaaa
ctggccaagaactgggccaagcagaagagcgtcaagctgccttccaataaagtcatcacg
cgggcccagtacgacaagcacatgaaagtcgcgcagggctgccgccgcaagatcaagaaa
atcgagaaagaaaccaacaccgccaaggaccagttgctggccaccgtgcgcaccatcgcc
cgcggccgggtgaaggacaagaccgccaagcgcgaactggccgaggccaacctgcggctg
gtcgtcagcatcgccaaaaaatacaccaaccgcggcctgcaatttctcgacctcatccag
gagggcaacatcggcctgatgaaagccgtcgataagttcgagtaccgccgcggttacaag
ttcagcacctacgccacgtggtggatccgccaggccatcacccgcgccatcgccgaccag
gcccgcaccatccgcatcccggtgcacatgatcgagaccatcaacaaactcatccgcgtc
tcccgccacctggtgcaggagctcggacgcgaaccgacgccggaagagatcgccgaaaag
atgagcctgccggtggacaaggtgcgcaaggtgctcaagatcgccaaggagccgatttcg
ttggaaacgccgatcggcgaggaagagaacagccacctgggcgatttcatcgaagacaag
aaagtgctctcgcccatcgactcggtggtcaaaaagaacctgaaggaacagacattgaag
gtgctgggcacgctggccagccgcgaggaaaaagtgctgcgcaaacgcttcggcatcggc
ctcgactccgagcacacgctggaagaagtgggccaggatttcgccgtcacgcgcgagcgc
atccggcagatcgaggccaaggcgctgcgcaaactgcggcaccccagccggtccaagaaa
ctgcgcagtttcatagagggctga
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