Nitrospina watsonii: NSPWAT_1615
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Entry
NSPWAT_1615 CDS
T08754
Symbol
rpoN
Name
(GenBank) RNA polymerase, sigma-54 factor (Sigma N)
KO
K03092
RNA polymerase sigma-54 factor
Organism
nwt
Nitrospina watsonii
Pathway
nwt02020
Two-component system
nwt02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nwt00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
NSPWAT_1615 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
NSPWAT_1615 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwt03021
]
NSPWAT_1615 (rpoN)
Transcription machinery [BR:
nwt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
NSPWAT_1615 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
DUF16
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
CAI2718474
LinkDB
All DBs
Position
NSPWAT:1699208..1700674
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AA seq
488 aa
AA seq
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MAMEMKLNLKMAQKLVMTPMLQQAIKLLPLARLELAQLVRQELVDNPILEELIDEESFLE
DEDGEPEASPEDNLLDSLGETPVDGDKKDDNDPIEQEVDWENFLQDNYEYSPSPGAEAAP
ERPSIEATYKKDPSLSDHLHWQLSLTVDSDEDKFIGSCIIGNIQSDGYCTAELSELAEIS
NSTVEDVERILKIMQTFEPLGVCARTLQECLMIQAQALPERLETVEILIDKYLEKINERF
YQKIANELKRSVEEIIDAIEIIRSFDPKPGFNFSSEGTDYVIPDLVVLKNEKGEYDVTLN
DEGIPRITISPYYQTLLKSSRESETKEYLENKYRSAMWLIKSIDQRRQTIYKVGKSIVKL
QKEFLDEGLAHLRPMVLRDVAQDIEMHESTVSRITTNKYIDTPQGIFELKFFFHSGIKSY
TGDNNLSSIRVKTMIKEIVQDEDPKKPYTDDEMVEILMKKNAKIARRTVTKYRKELNLPP
ASKRKKFY
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atggccatggaaatgaaattgaacctgaagatggcccagaagctggtgatgactcccatg
cttcagcaggccatcaagctgttgccgctcgcgcgtctggaactcgcccaactggtccgg
caggaactggtggacaatcccatcctggaagaactcatcgacgaggaatccttcctggaa
gacgaagacggcgaacccgaggccagcccggaagacaacctgttggattcgctcggcgag
accccggtggatggagacaagaaagacgacaacgatcccatcgagcaggaagtcgattgg
gaaaattttctgcaagacaattacgagtacagccccagccccggcgccgaggccgcaccc
gaacggccctcgatcgaggccacctataaaaaagacccctccctcagcgatcacctgcac
tggcagttgagcttgaccgtggacagcgacgaagacaagttcatcggctcctgcatcatc
ggcaacatccagagcgacggctactgcaccgccgagctttccgagcttgcggaaatcagc
aacagcacggtggaagatgtcgaacgcattctgaaaatcatgcagacgtttgaacctctc
ggcgtttgcgcccgcactttacaggaatgcctgatgatccaggctcaggctctgcctgaa
cgattggagacggtcgaaatcctcatcgacaaatacctcgaaaaaatcaacgaacggttt
tatcaaaaaatcgccaacgagttgaaacgatcggtagaagagatcatcgatgccatcgag
atcattcgcagcttcgatcccaagccgggattcaacttcagttccgaaggcacggactac
gtcatcccggatctcgtggtcctgaaaaatgaaaaaggggaatacgacgtgaccttgaac
gacgaaggcattccgcgcatcaccatcagcccgtactatcagacgctgttgaaaagttcg
agagaaagcgagaccaaggaatacctcgaaaacaagtaccgttctgccatgtggctcatc
aagagcatcgatcaacgacggcagactatttacaaagtaggcaaaagcattgtcaaattg
cagaaagaatttctcgacgaggggttggcgcatctgcggccgatggtgttgcgggatgtg
gcgcaggacatcgaaatgcatgaatccaccgtcagccgcatcaccaccaacaaatacatc
gacacgccacagggtatttttgaactcaaattcttcttccacagcggcatcaaatcgtac
accggagacaacaacctgtcctcgatccgggtcaaaaccatgatcaaggaaattgttcag
gatgaagacccgaagaaaccttataccgacgacgaaatggtcgagattttgatgaaaaaa
aatgccaaaattgcgcggaggaccgtcaccaaataccggaaggagttgaaccttcctccc
gccagcaagcggaaaaaattttattga
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