Nitrospina watsonii: NSPWAT_2558
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Entry
NSPWAT_2558 CDS
T08754
Symbol
rpoA
Name
(GenBank) RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
nwt
Nitrospina watsonii
Pathway
nwt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nwt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
NSPWAT_2558 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nwt03021
]
NSPWAT_2558 (rpoA)
03400 DNA repair and recombination proteins [BR:
nwt03400
]
NSPWAT_2558 (rpoA)
Enzymes [BR:
nwt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
NSPWAT_2558 (rpoA)
Transcription machinery [BR:
nwt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
NSPWAT_2558 (rpoA)
DNA repair and recombination proteins [BR:
nwt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
NSPWAT_2558 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
GCD14
Motif
Other DBs
NCBI-ProteinID:
CAI2719414
LinkDB
All DBs
Position
NSPWAT:complement(2672590..2673615)
Genome browser
AA seq
341 aa
AA seq
DB search
MMQGIVKPKRLDFDKKTRSETYAKYQAGPFERGYGITVGNSLRRMLLSSIEGTAVTGVKF
DGVFHEFSSIPGVMEDVTEIILNLKKLKLKLNGSEDSKRLYLKRNTAGEVLASDFQEDSD
VTILSPDHKIATLDSNGNLDMEVLIQRGRGYVPADRHDMTTESVQMIPVDALFSPVEKVH
YTVEKTRVGQSQDYDSLVMELWTDGSISPEDAVAHAAKIVKDHMQIFINFDEEPEPVQPQ
IDEKKQKLLTNLAKSVEELELSVRSYNCLKNANITTIAELVQKGDSEMLKTRNFGRKSLN
EIKEILEEMGLSLGLKLEDEDIRQIQAMRKKKEVELEGERA
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgatgcagggaattgtaaaacccaagcgtctcgattttgataaaaagacccggtccgag
acctacgccaagtaccaggccggtcccttcgaacggggctatggcatcaccgtcggcaat
tcgctgcggcgcatgctgctttcttcgatcgaaggcaccgccgtcaccggtgtgaagttt
gatggcgtgttccacgaattctcgtccattccgggcgtcatggaagacgtgaccgaaatc
attctcaatctgaaaaagctgaagctgaaactcaatggcagcgaagacagcaagcgcctg
tacctgaagcgcaacaccgcaggcgaagtgctggccagtgattttcaggaagattcggat
gtcaccatcctgagcccggatcataagatcgccacgctcgacagcaacggcaatctggac
atggaagtgctcatccagcgtggacgcggctacgtgccggcggaccggcatgacatgacc
accgaatcggtgcagatgatccccgtggacgcgctgttctcgccggtggaaaaagtgcac
tacaccgtcgaaaaaacccgtgtcgggcagtctcaggactacgattcgctggtcatggaa
ttgtggaccgatggcagcatctctccggaagacgccgtggcgcacgccgccaagatcgtc
aaggatcacatgcagatcttcatcaacttcgatgaagagccggaaccggtgcagccgcag
atcgatgaaaagaaacagaaactgctcaccaacctggcgaaaagcgtcgaggaactggag
ctgtccgtccgctcctacaactgcctcaagaacgcgaacatcaccaccatcgccgagttg
gtgcagaagggcgacagcgaaatgctgaaaacccgcaacttcggccgcaagtcgctcaac
gagatcaaggagattctcgaagaaatgggcctgtcgctgggcttgaaactggaagatgaa
gacatccgccagattcaggcgatgcgcaagaagaaagaagtcgaactcgagggagaacgc
gcctga
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