Nocardia yamanashiensis: LTV02_03405
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Entry
LTV02_03405 CDS
T07935
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
nya
Nocardia yamanashiensis
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nya03019
]
LTV02_03405 (hrpA)
Enzymes [BR:
nya01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
LTV02_03405 (hrpA)
Messenger RNA biogenesis [BR:
nya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
LTV02_03405 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
nSTAND3
HA2_N
SLFN-g3_helicase
AAA_30
T2SSE
NACHT
ResIII
Phage_spike_P1
TsaE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UGT42480
LinkDB
All DBs
Position
complement(727227..731228)
Genome browser
AA seq
1333 aa
AA seq
DB search
MTRTAATFRDLRTRLADLSIRDEHRLRRRLDKARGADLTDLEREIDAARQRVENRRAAVP
AISYPEQLPVSARRDDIARAIADHQVVIVAGETGSGKTTQIPKICLELGRGIRGTIGHTQ
PRRLAARTVAERIAEELGTELGDVVGYTVRFTDQASDRTLVKLMTDGILLAEIQRDRMLR
RYDTIIIDEAHERSLNIDFLLGYLKQLLPKRPDLKVIITSATIDPELFARHFSDEKGSPA
PIVEVSGRSYPVEIRYRPLSLELPVTSEDPDDEDTEIVDRDPTDAIADSVRELQAEGDGD
ILVFLSGEREIRDTADSLRDLRLPRTEIVPLYARLSAAEQHKVFEAHTGRRVVLATNVAE
TSLTVPGIRYVIDPGTARISRYSMRTKVQRLPIEPVSQASARQRSGRCGRVADGIAIRLY
SEDDFESRPQFTEPEILRTNLAAVILQMTALGLGDIESFPFVEAPDNRAIRDGIALLEEL
GALGRKAEDGGADIPNAGLVLTAIGREMAQLPVDPRMARMLVEAQRGGCLAEVLVIVAAL
SIQDVRERPVEHQQAADTKHARFTVEGSDFLAYLRLWDYLGDQRKALSSNQFRRMCRDEF
LHYLRIREWQDLHGQLRTITRGLGWNTDASNTERSTLDSDALPWDITSIHQALLAGMLSH
IGVREAETREFLGARNAKFMIFPGSSLAKKPPRWVMAAELVETSRLWGRTAARVEPEWAE
RLAGDLVKRTYSEPHWSAKRGAALAYERVTLYGIPLVTQRRVDFGRIDPELSRELFLRHA
LVQGEWQTRHEFFARNRELLDDVADLEHRARRRDILVDDQVLFEFYDQRIPADVVSVRHF
DSWWKKTQRKEPALLDFTASTIVNEDAALLDPTAYPDSWRQGELTFPLTYQFEPGQADDG
VTVHIPIAQLAHVRAVGFDWLVPGMREELAAALIKTLPKQLRRMVVPAPDFAQAALARLT
PRAEPLRIGLARELSQLGSVTITAGQLDPAGLPDHLRMTYAAVDAGGEIVARSKDLAELK
ARLATQVSKSVARANNAAERAPAAVWTSESLGTLESSVKRQVGGQTITGYPALVAEPDGV
AVRVLSSPGAQAAAMRVGTRTLLLNAIPTSPRAVTASLKPADRLALSQNPYGSLDALVED
CRACAADELIAANGGPVRSPEQFKALVEKVRPQFTTAVANVVRAVVPVLAEAHRVRAALT
ETRDRDAVQDVRHQLDDLVFAGFISEWGSARLRELPRYLEAARLRLEALPASANRDQAGM
VELDRVHAAYDRLVDQLPEGRKGGRDVVEIWWMIEELRVSLFAQQLGTPFPVSAKRIEKA
IDAARRPPQQARR
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgaccaggaccgccgccacctttcgcgaccttcgaacccgcctggccgatctctcgatc
cgcgacgaacaccgtttgcgtcggcggctcgacaaggcccgcggtgcagacctcaccgat
ctcgagcgcgagatcgacgccgcccggcaacgggtggagaaccgccgcgccgccgtaccc
gcgatcagttatcccgagcagctgccggtttcggcgcgccgggacgatatcgcgcgggcg
atcgccgaccaccaggtcgtgatcgtggccggtgagaccggctcgggcaagaccacccag
attccgaagatctgcctggagctggggcgcgggattcgcgggaccatcgggcacacccag
ccgcgccggctggccgcgcgcacggtggccgagcggatcgccgaggaactgggcaccgaa
ctgggcgatgtggtcggctatacggtgcgtttcaccgatcaggcctccgatcgcacgctg
gtgaagctgatgacggacggcattctgctggccgagatccagcgcgatcgcatgctgcgg
cgctacgacaccatcatcatcgacgaggcgcacgagcgcagtctcaatatcgacttcctg
ctcgggtatctgaagcagttgctgccgaagcggccggatctgaaggtgatcatcacctcg
gcgaccatcgatccggaactgttcgcgcggcacttcagcgatgaaaagggctcgcccgca
ccgatcgtcgaggtgtcggggcgctcgtatccggtggagatccggtatcgcccgctgtcg
ctggaacttccggtcacctccgaggatcccgacgacgaggacaccgagatcgtcgaccgc
gatcccaccgacgccatcgccgattcggtgcgcgaactgcaggccgagggcgacggcgac
atcctggtgttcctctccggcgagcgcgagatccgcgataccgccgattcgctgcgcgat
ttgcgtttgccgcgcaccgaaatcgtgccgctgtacgcgcggctgtccgcggccgaacag
cacaaggtgttcgaggctcacaccgggcggcgggtggtgctggcgaccaacgtggccgag
acctcgctgaccgtgcccggcatccgctacgtcatcgatccgggcaccgcgcgaatctcc
cgctactccatgcgcaccaaggtgcagcggctgcccatcgaaccggtgtcgcaggcctcg
gcgcggcagcggtccggtcgctgcggtcgtgtcgcggacggcatcgccatccggttgtac
tccgaggacgatttcgaatcccggccgcagttcaccgaaccggagatcctgcgcaccaac
ctggccgcggtcattctgcagatgaccgcgctcgggctgggcgatatcgagagcttcccg
ttcgtggaggcccccgacaatcgcgccattcgcgatggcatcgccctgctcgaggagctc
ggcgcactgggccgcaaagccgaggacggcggggcagatatcccgaacgccggactggtg
ctcaccgccatcggccgggaaatggcgcagctgccggtcgatccgcgcatggcccgcatg
ctggtggaggcgcagcgcggcggctgcctggccgaggtgctggtcatcgtggcggcgctg
tccatccaggatgtgcgggaacgcccggtcgagcatcagcaggcagccgacaccaaacac
gcgcggttcaccgtggagggctcggacttcctggcctacctgcggctctgggattacctg
ggcgatcagcgcaaagccctgtcgtccaaccagttccggcgcatgtgccgcgacgaattc
ctgcactacctgcgcatccgggaatggcaggacctgcacgggcagctacgcaccatcacc
cgcgggctgggctggaacaccgacgcctcgaacaccgagcgctccaccctcgactccgac
gcgctgccctgggacatcacctcgatccatcaggcgctgctggccggcatgctctcgcat
atcggcgtccgcgaggccgagacccgggaattcctgggcgcgcgcaatgccaagttcatg
atcttccccggctcgtcgctggccaagaagccgccgcgctgggtgatggccgccgaactg
gtggagacctcccggctgtggggtcgcaccgcggcccgggtggaaccggaatgggccgag
cggctggccggcgatctggtgaaacgcacctactccgaaccgcattggtcggccaagcgc
ggcgcggcgctggcctacgagcgggtcacgctgtacgggattccgctggtcacccagcgg
cgggtggatttcgggcggatcgatccggaactgtcgcgcgaactgttcctccggcacgcc
ctggtacagggcgaatggcagacccggcacgagttcttcgcgcgcaatcgcgaattgctc
gacgatgtggccgatctggagcatcgggcccgccgtcgcgacatcctggtcgacgatcag
gtgctgttcgagttctacgaccagcggattccggccgatgtggtgtcggtgcggcatttc
gacagctggtggaagaagacgcagcgcaaggaaccggcgctgctggacttcaccgcgtcc
accatcgtgaacgaggatgcggcgctgctggatccgaccgcgtaccccgacagctggcgg
cagggtgagctgaccttcccgctcacctatcaattcgagcccggccaggccgatgacggt
gtgaccgtgcacattccgatcgcgcaactggcgcatgtgcgggcggtcggtttcgactgg
ctggtgcccggtatgcgcgaggagctggcggcggcgctgatcaaaacgctgccgaagcag
ttgcggcgcatggtggtgcccgcgccggacttcgcgcaggcggcgctggcgcgactgacg
ccgcgggccgaaccgctgcgcatcgggctggcgcgggagctgtcgcagctcgggtcggtg
accattaccgccggtcagctggatccggcggggctgcccgaccatctgcggatgacctat
gccgctgtggacgcgggcggggaaatcgttgcgcgcagcaaggatctggcggagctgaag
gcgaggctggccacccaggtgtcgaaatcggtggcgcgggccaacaatgccgccgagcgc
gccccggccgccgtgtggacctccgaatcgctgggaacgctggagagttcggtcaagcgc
caggtcggcgggcagaccattaccgggtatccggcgctggtggcggaaccggacggggtg
gcggtgcgggtgctcagctcgcccggcgcccaggcggcggccatgcgggtcgggacccgg
acactgctgctcaatgcgataccgaccagtccgcgcgcggtgaccgcgagcctgaaaccg
gcggatcggcttgcgctgagccagaatccgtacggatcgctggacgccctggtcgaggac
tgccgggcgtgcgccgccgatgagctgatcgcggccaatggcgggccggtgcgcagcccc
gagcagttcaaggcgctggtggagaaggtgcggccgcaattcaccacggcggtggcgaat
gtggtgcgcgcggtggtgccggtgctggccgaggcgcatcgggtgcgggcggcgctcacc
gagacccgcgatcgcgatgcggtgcaggatgtgcggcatcagctcgacgatctggtgttc
gcgggcttcatctccgaatggggcagcgcccgattgcgggaactgccacggtatctggaa
gccgcgcgcctgcgactggaggcgctacccgcgtcggccaatcgcgatcaggcgggcatg
gtcgaattggatcgggtgcacgccgcctacgaccggctcgtcgatcagctgcccgagggg
cgcaagggcgggcgcgatgtggtcgaaatctggtggatgatcgaggaattgcgggtcagc
ctgttcgcgcagcagctcgggacgccgttcccggtgtcggccaagcgcatcgagaaggcc
atcgacgcggcccggcggccgccgcagcaggcgcgccgctga
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