Nocardia yamanashiensis: LTV02_04005
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Entry
LTV02_04005 CDS
T07935
Name
(GenBank) HAMP domain-containing protein
Organism
nya
Nocardia yamanashiensis
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAMP
HAMP_2
Response_reg
HATPase_c
GAF_2
HisKA
GAF
GAF_3
CovS-like_HAMP
Laminin_II
DUF948
Baculo_PEP_C
NUDE_C
ATG14
OmpH
Motif
Other DBs
NCBI-ProteinID:
UGT42594
LinkDB
All DBs
Position
857994..862244
Genome browser
AA seq
1416 aa
AA seq
DB search
MSDAATPSRPVTQHAGSPADQVELRKLLAGLTAVRDGDFGTRLPADADGLLGEIATVFNG
MVDQLSLFTSEVTRVAREVGSEGQLGGQAEVPGVGGVWRDLTDSVNFMAGNLTAQVRNIA
QVTTAVARGDLSQKITVTARGEIQELKNTINTMVDQLSSFADEVTRVSREVGTEGILGGQ
ADVKGVSGTWRDLTDSVNFMAGNLTAQVRSIAQVATAVARGDLTQKINVNARGEILELKN
TINTMVDQLSSFADEVTRVSREVGTEGRLGGQADVKGVSGTWKDLTESVNVMADNLTAQV
RSIAQVTTAVADGDLTQKIRVDARGEILELKETINTMVDQLSSFADEVTRVAREVGTEGN
LGGQATVRGASGTWKDLTDNVNVMAFNLTNQVRSIAQVATAVARGDLGQKITVEAKGEVA
ALAGVINTMVDTLSAFADEVTRVAREVGTEGMLGGQARVPNVAGTWKDLTDNVNSMANNL
TNQVRNIAQVTTAVAQGDLTSKIDVDARGEILELKTTINTMVDQLSAFAAEVTRVAREVG
SEGRLGGQAEVEGVSGTWKRLTENVNELAGNLTRQVRAIAEVTSAVAEGDLTRSITVEAS
GEVADLKDNINSMVESLRETTKANQDQDWLKTNLARVSGLMQGPRDLRVVAELIMDELVP
LVSAQFGAFYLADDTVDPPELRLLGSYGSPEKPGSTPSFTFGQSLVGQAARSRRTIAVDD
VPGDYVTISSGLGRTAPVNLLVLPIVVEDQVLGVIELASLHRFTRIHRDFLDQLMETVGV
NVNTIVANARTDELLVESQRLTSELQARSQELQVRQEELQSSNAEMEEKAALLARQNRDI
EAKNLEIEQARQELETRAQELSLASKYKSEFLANMSHELRTPLNSLLILAQLLAQNPSRN
LTAKQVEYAGIIHSAGSDLLQLINDILDLSKVEAGKMDIAPERVPLRRLLDYVEATFRPL
TTQKNLGFRIVTTEGLPPDLLTDDSRLRQVLRNLLSNAVKFTESGSVELRIGPADSQELP
PAARRHGPAVAFRVVDTGIGIAEHQLDSIFGAFQQADGTTSRKYGGTGLGLSISREIAYL
LGGAITAESAIDQGSTFTLYLPVARPDFVEIPHAERETAPAADAAPDGDSAAPQQQRRLL
VVEDRPQGLLSLVAQSAVADLADRDDPRGPVQLVSAVGVQEAAAALDAEAFHCVVLALDM
PGDHALRFLDILDADPACGGIPVLAHIRRLGGEHERLLQERTVRRPLELLSSLDELRERI
ALHVTAEAPGDVLPLVRAEQAEAPAPQQPAGELAGRTVLIVDDDARNLFALSSILELHGI
GVVHAENGREGIDKLVAHPEVDLVLMDVMMPEMDGYTATATIRDIPRYAHLPIIAVTAKA
MPGDRDKSLAAGANDYVTKPVDADVLLGCIQHWLSV
NT seq
4251 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcggcgacgccgagtcgtcccgtaacgcagcacgccggatcgcctgcggac
caggtcgagctgcgaaaactgctggccggtctgaccgccgtgcgcgacggcgatttcggc
acccggctgccggccgacgcggacggtttgctcggcgagatcgccaccgtcttcaacggc
atggtcgaccagctgtcgctgttcacctccgaggtcacccgggtggcccgcgaggtcggt
tccgagggccagctcggcggccaggccgaggtgccgggcgtcggcggcgtctggcgcgat
ctcaccgattcggtgaacttcatggccggcaatctgaccgcgcaggtccgcaatatcgcc
caggtgaccacggcggtcgcgcgcggcgatctgagccagaagatcaccgtcaccgcccgc
ggcgagatccaggagctcaagaacaccatcaatacgatggtcgatcagctgtcgtccttc
gccgacgaagtgacccgcgtttcccgcgaggtcggcaccgagggcatcctcggcgggcag
gccgacgtgaagggcgtctcgggcacctggcgggatctcaccgactcggtgaacttcatg
gcgggcaacctcaccgcccaggtgcgatcgatcgcgcaggtcgcgaccgcagtcgcgcgc
ggcgatctgacccagaagatcaatgtcaatgcccgcggcgagatcctcgagctcaagaac
accatcaatacgatggtcgatcaactgtcctccttcgccgacgaagtgacccgcgtttcc
cgcgaggtcggcaccgagggccggctcggcgggcaggccgatgtcaagggcgtctcgggc
acctggaaggacctcaccgaatcggtgaacgtcatggccgacaatctcaccgcgcaggtg
cgatcgatcgcccaggtcaccaccgcggtcgccgacggcgatctgacccagaagatccgg
gtcgacgcccgcggcgagattctcgagctgaaggagaccatcaatacgatggtcgatcag
ctgtcctccttcgccgacgaggtcacccgcgtggcccgtgaggtcggcaccgaaggcaat
ctgggcgggcaggcgaccgtgcgcggggcgtcgggcacctggaaggacttgaccgacaac
gtcaatgtgatggcgttcaacctgaccaaccaggttcgctcgatcgcgcaggtcgccacc
gcggtggcgcgcggcgatctcggccagaagatcaccgtggaggccaagggcgaggtcgcg
gcgctggccggggtgatcaatacgatggtcgacaccctctccgccttcgccgacgaggtc
acccgcgtggcccgcgaggtcggcaccgaaggcatgctcggcggtcaggcgcgggtgccg
aacgtggccggcacctggaaggacctgaccgacaacgtcaattcgatggccaacaacctg
accaatcaggtgcgcaatatcgcgcaggtgaccacggcggtggcgcagggcgatctgacc
agcaagatcgacgtggatgcgcgcggggagatcctcgagctcaagaccaccatcaacacc
atggtcgatcagctgtcggcgttcgccgcggaggtcacccgcgtggcccgcgaggtcggc
tccgagggtcggctgggcggtcaggccgaggtcgaaggcgtgtcgggcacgtggaaacgc
ttgaccgagaacgtgaacgagctggcgggcaacctgacccggcaggtgcgcgccatcgcc
gaggtgaccagcgccgtcgccgagggcgatctgacgcggtcgatcaccgtggaggcctcc
ggtgaggtggccgacctgaaggacaacatcaattcgatggtggagtcgctgcgcgagacc
accaaggcgaatcaggatcaggactggctcaagacgaatctggcgcgggtgtcggggctc
atgcaggggccgcgcgatctgcgggtggtcgcggaactgatcatggatgagctggtgccg
ctggtatcggcccagttcggtgcgttctatctggccgacgacaccgtcgatccgccggag
ctgcggctgctcggatcctacggcagtcccgaaaagccgggcagcacaccgagtttcacc
ttcgggcagtcgctggtggggcaggccgcgcgcagtcgccgcaccatcgccgtggacgat
gtgcccggcgactacgtcaccatctcctcggggctgggccggaccgcgccggtgaatctg
ctggtgctgcctatcgtggtcgaggatcaggtgctcggcgtcatcgaactggcgtcgctg
catcggttcacgcgtattcaccgcgacttcctggatcagttgatggagaccgtcggcgtc
aacgtcaacaccatcgtcgcgaatgcgcgcaccgacgaactactggtggaatcgcagcgt
ctcacctccgaattgcaggcccgctcacaggaattgcaggtgcggcaggaggagttgcag
agctccaatgccgaaatggaggagaaggccgcgctgctggcccgccagaaccgcgatatc
gaggccaagaacctcgaaatcgagcaggcgcgacaggaattggagacgcgcgcgcaggag
ctgtcgctggcctccaagtacaagtcggagttcctggcgaatatgagccacgaactgcgc
acgccgctcaacagcctgctgatcctggcgcagctgctggcgcagaacccgagccggaat
ctgaccgccaagcaggtcgagtacgcggggatcatccattcggcgggttcggatctgctg
caactgatcaacgacattctggatctgtcgaaggtcgaagcgggcaagatggatatcgcc
ccggaacgggtgccgctgcgccgtctgctggactatgtcgaggccaccttccggccgctg
accacccagaagaatctcggcttccgcatcgtgaccaccgagggtttgccgcccgatctg
ctcaccgacgattcgcggctgcggcaggtgctgcgcaatctgctctcgaacgcggtcaaa
ttcaccgaatccggttcggtggaactgcgtatcggcccggccgacagtcaggaactgccg
cccgccgcgcgccggcacggtcccgccgtggcgttccgggtggtcgacaccggcatcggt
atcgccgagcatcagctcgattcgatcttcggcgccttccagcaggcggacgggacgacc
agccgcaaatacggcggcaccgggctcgggctgtcgatcagccgggagatcgcctatctg
ctcggcggcgcgatcaccgcggagagcgcgatcgatcagggcagtaccttcacgttgtat
ctgcccgtcgcgcgtccggatttcgtggagatcccgcacgccgaacgcgagaccgcgccg
gcggcggacgccgcgccggacggcgattccgctgcgccgcaacagcaacggcgactgctg
gtggtggaggaccgcccgcaggggctgctgtcgctggtcgcgcagagcgcggtcgcggac
ctggccgatcgcgacgatccccggggtcccgtgcaactcgtcagcgcggtcggggtgcag
gaagccgcggcggccctggacgccgaggcgttccactgcgtggtgctggcgctcgacatg
cccggcgatcatgcgctgcgctttctcgacatcctggacgccgatccggcgtgcggcggt
atcccggtgctggcgcacatccggcgcctcggcggcgaacacgagcggctgctgcaggag
cgcaccgtgcgccggccgctggaattgctgtcgagcctggatgaactgcgtgagcgaatc
gccttgcacgtcaccgccgaagcgcccggcgacgtcctgcccctggtgcgcgccgagcag
gccgaagcgcccgcgccgcagcagcccgccggtgaattggccgggcgcaccgtgctgatc
gtcgatgacgacgcacggaatctgttcgcgctcagcagcattctggaattgcacggcatc
ggcgtggtgcatgcggagaacggccgcgagggtatcgacaaactggtcgctcaccccgaa
gtggatctggtgctgatggacgtcatgatgcccgaaatggacggctacaccgcgaccgcc
accatccgcgacatcccccgctacgcccatctgccgatcatcgccgtcaccgccaaggcc
atgcccggcgaccgcgacaagagcctggccgccggcgccaacgactacgtcaccaaaccg
gtcgacgccgacgtcctcctcggctgcatacaacactggctgagcgtgtga
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