Nocardia yamanashiensis: LTV02_13985
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Entry
LTV02_13985 CDS
T07935
Symbol
recD
Name
(GenBank) exodeoxyribonuclease V subunit alpha
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
LTV02_13985 (recD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_13985 (recD)
Enzymes [BR:
nya01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
LTV02_13985 (recD)
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LTV02_13985 (recD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
UvrD_C_2
AAA_11
UvrD-helicase
Viral_helicase1
Helicase_RecD
AAA_22
SH3_13
AAA_16
T2SSE
nSTAND3
UvrD_C
Motif
Other DBs
NCBI-ProteinID:
UGT44429
LinkDB
All DBs
Position
complement(2885312..2887273)
Genome browser
AA seq
653 aa
AA seq
DB search
MTSIQLAQRGTGPLQVFNAAGVLSAADLHVALRLGRLGREQSELVLFATALAVRAVRSGS
VCLEVRRMHEIGVDAEGTEESTIDPSTLPWPDVDAVIAALRVSPLVCGSPAGPLRPLRLV
EPAAGSEASPLLYLDRYFRQEETIRAALIERAASRPMVDAGLIRRELDRLFPPQPGSGEF
DRQRLAAALATTRWTTVIAGGPGTGKTHTIARVLALLVAHQQALPNAPALRIALAAPTGK
AAARLQESVREQAGDIGLPELTAATLHRLLGWQRGGAGRFKHNEFNRLPYDVIVVDETSM
VSLTMMSRLLPAVRPDARLVLVGDPDQLASVDAGAVLADLVAGPVPGQDNPVLDEILAGG
GPEVTGPDPGIQHATTGSGDARTVSGSAGGPVADALSPRERERLRGGIVRLTRGRRFGGR
IADLAVAVRAGDADTALELLAAGGDELALHHPDDITEVRANVLRASQAATEAALAGDAIA
ALTALESHRLLCAHRQGVYGVDRWDRLAAGWVTAAGISSDPGAGHWYPGQPLLVTANDHE
ARIYNGDTGVIVRGPDGSLRAALQRGTEPYLVHPTQFPGVTTVYAMTIHRSQGSQYDNVS
VVLPGPESTLLTRELLYTAITRARKHVRVLGTEEAIRAGIARRVLRASGLRAQ
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgacctcgattcagttggcgcagcgcggaaccgggccattgcaggtgttcaatgccgcc
ggagtgctgtccgccgccgacctgcacgttgccctgcgattgggacggctcggccgggaa
cagtcggaactggtgctgttcgcgacggcgctggcggtgcgcgcggtgcgctccggttcg
gtgtgcctggaagtgcggcgcatgcacgagatcggtgtggatgccgaaggtaccgaggaa
tcgaccatcgatccctcgaccttgccgtggccggatgtggacgcggtgatcgcggcgctg
cgggtgagtcctctggtctgcgggagcccggcgggtccgctgcggccgttgcggctggtc
gaacccgccgccgggtcggaggcgagcccgctgctgtacctggatcgatacttccggcag
gaggagacgatccgggccgccttgatcgagcgcgcggcctcgcgaccgatggtggacgcg
ggactgattcgccgcgaactggatcggctgttcccgccgcagcccggttccggggagttc
gaccggcagcggctggctgccgccttggccaccacgcgctggaccaccgtgatcgcgggc
ggaccgggtaccggcaagacgcacaccatcgcccgcgtgctggcgttgctcgtcgcccat
cagcaggccctgccgaacgcacccgccctgcgcatcgccttggccgcgccgaccggcaaa
gccgctgcgcgccttcaggaatcggtccgtgaacaggccggtgacatcggcttgcccgag
ttgaccgccgcgacgctgcaccggttgctgggctggcagcggggcggggcggggcgtttc
aagcacaacgagttcaaccggctgccctacgacgtcatcgtggtggacgagacctccatg
gtgtcgctgaccatgatgagccgattgctcccggccgtacgcccggacgcgcgcctggtg
ctggtcggtgacccggatcagctggcctccgtcgatgcgggcgcggtgctcgccgacctc
gtcgcgggacccgttcccggacaggacaatccggtgctcgacgagatcctcgcgggtggc
ggaccggaggtcacggggccggacccgggaatccagcacgccaccaccgggtcgggtgac
gcgcgcacggtctcgggttccgccggtggcccggtggccgacgccttgtcaccgcgtgag
cgggaacggttgcgcggcggcatcgtccggctcacgcgtgggcggcgcttcggcggacgc
atcgccgatctcgccgtcgcggtccgcgccggtgacgccgacacggcgctggaactgctg
gcggcgggcggggacgaactggccctgcaccatcccgacgacatcaccgaggtgcgcgcc
aatgtcctgcgcgcctcgcaggccgccaccgaggccgcgctcgcgggcgacgccatcgcc
gccctgaccgcgctcgaatcgcaccgcctgctgtgcgcgcaccggcagggcgtgtatggc
gtggatcgctgggaccggctggccgccgggtgggtcaccgccgccggcatcagctccgat
cccggtgcggggcactggtatcccgggcagccgctgctggtcaccgccaacgatcacgag
gcgcgcatctacaacggcgacaccggcgtcatcgtccgcggccccgacggcagtctgcgc
gcggcactgcaacgcggcaccgagccgtacctggtgcatccgacgcagttccccggcgtt
acgaccgtgtatgccatgaccattcaccgcagtcagggcagccagtacgacaatgtgtcg
gtcgtactgcccgggcccgaatcgacgctgctgacgcgggagctgctgtacacggccatc
actcgggcccgcaagcacgtgcgggtgctggggaccgaggaggcgatccgggccgggatc
gcccggcgtgtcctgcgtgccagcggcctgcgcgcgcaatag
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