Nocardia yamanashiensis: LTV02_14895
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Entry
LTV02_14895 CDS
T07935
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
LTV02_14895 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_14895 (ligD)
Enzymes [BR:
nya01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
LTV02_14895 (ligD)
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
LTV02_14895 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
UGT44591
LinkDB
All DBs
Position
complement(3071776..3072741)
Genome browser
AA seq
321 aa
AA seq
DB search
MAASRRPVPAPMLAVGGAPPGGPEWAVEMKWDGVRVIAACEDGECSLYSRNANDVSANYP
ELVAGLKALAGKETLILDGEIVAQDPDGAPSFGRLQRRMHVARPGEQLIAEVPVRMFAFD
VLAIGTRELAGEPYAERRAALAELPFQTPLSAPPHWVGVDAGELLKVAGEHRLEGIVSKR
LDSVYLPGRRSGWWVKTPLRHRTEVVVAGWTPGAGGFATTFGSLVLGAHDASGRFVFIGL
AGTGFTHAARRVIRAALDEIAIPACPFAQPPPEARAGGWHWVEPILVGDVEYREYSGARL
RMPSWKGLRTDKTPDQVKEPD
NT seq
966 nt
NT seq
+upstream
nt +downstream
nt
gtggcagcgtcgcgccgcccggtgcccgcgcccatgctggccgtcggcggtgcgccgccg
ggcggaccggagtgggcggtggagatgaaatgggacggggtgcgggtgatcgcggcgtgc
gaggacggggagtgctcgctctacagccgcaacgccaatgacgtcagcgccaactatccc
gagctagtcgccggcctgaaagccttggcgggcaaggaaaccctgatactggatggcgag
atcgtcgcgcaggatccggatggcgcgccgtccttcgggcggttgcagcggcggatgcac
gtggcgcggccgggcgagcagttgatcgccgaggtgccggtgcggatgttcgccttcgac
gtgctcgcgatcgggacgcgggagctggcgggcgaaccgtatgccgagcgccgtgcggca
ctggccgaactgcccttccaaaccccgctgtccgccccgccgcactgggtcggagtggac
gccggagagttgctgaaagtggcgggggagcatcgtctggaagggatcgtctccaagcga
ttggattcggtgtacctgcccggccgccgctcgggctggtgggtgaaaaccccgctgcgc
catcgcaccgaagtggtggtggcgggctggaccccgggcgcgggcggcttcgccaccacc
ttcggctcgctggtcctcggcgcccacgacgcgagcggccggttcgtcttcatcggtttg
gcgggcaccggtttcacccacgccgcccggcgcgtgatccgcgccgccctcgacgagatc
gccatccccgcctgccctttcgcgcagcccccgcccgaagcgcgggcgggcggctggcac
tgggtggagcccatcctggtcggcgatgtcgagtaccgcgaatactccggcgcccggctg
cgcatgccgagctggaagggcctgcgcaccgacaagacccccgaccaggtgaaagaaccc
gactag
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integrated database retrieval system
