Nocardia yamanashiensis: LTV02_21575
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Entry
LTV02_21575 CDS
T07935
Name
(GenBank) helix-turn-helix domain-containing protein
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LTV02_21575
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nya03000
]
LTV02_21575
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_21575
Enzymes [BR:
nya01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
LTV02_21575
Transcription factors [BR:
nya03000
]
Prokaryotic type
Helix-turn-helix
AraC family
LTV02_21575
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LTV02_21575
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ada_Zn_binding
AlkA_N
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
UGT38715
LinkDB
All DBs
Position
4561127..4562671
Genome browser
AA seq
514 aa
AA seq
DB search
MSANDLDFERCYRAVATRDARFDGQFFTAVRTTGIYCRPSCPAITPKRANVTFLPTAAAA
QQSGFRACRRCLPDAAPGSPLWNTRADLASRAMRLIADGVIERGGVPALADALGYSQRQL
TRVLTGELGAGPLALARAHRAHTARLLIQTTRLPMSDIAFAAGFASIRQFNDTVREVFAV
SPTTLREESRRRNGDTLPTSNGLLTLRLPYREPLDKTWLEWFLAAHTVPGLETFEDGRYT
RSLRTPHGHTTIRLSVQPGHVRASLALQDMRDLAPTVARLRHFLDLDADPIGIDEALAAG
MSGGEVRPFGEVHADPAITRNGLVLPPGIRVPGSLDGSELLLRTMIGQQISVAAANTHTA
RLVQQLGESIPGPIPHLFPTAAAIAEHGAEVLTGPSRRVEAIVGVARALANGELVLHSAR
TPAELRRDLLALDGVGPWTADYVTMRLLADPDILLHTDLIVRRGAALLGIDLADTARWAP
WRSYLSMHMWKHALAHPTPAPDGANGARKARTTP
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgcgaacgatctggatttcgagcgttgctaccgtgccgtggcaacccgggatgcc
cggttcgacgggcaattcttcacggcggtccgcactaccggaatctattgccgcccttcg
tgtcctgccatcaccccgaaacgggccaacgtcaccttcctgcccacggccgccgccgcc
cagcagtccgggttccgggcctgccggcgctgcctgcccgacgcggcgcccggttcgccg
ctctggaacacccgcgccgacctggcgtcgcgggccatgcggttgatcgccgatggggtg
atcgaacgcggtggggtgcccgcgctggccgacgccctcggctactcccagcgccagctc
acccgggtgctcaccggggaactcggggcggggccgctggccctggcgcgggcgcaccgg
gcgcacaccgcacgcctgctgatccagaccacccggctgcccatgtccgatatcgccttc
gcggcgggtttcgccagcatccggcagttcaacgacaccgtgcgggaggtgttcgcggtc
agcccgaccacgctgcgcgaggaatcgcggcggcgcaacggcgataccctgccgaccagc
aacgggctgctcacgctgcggctgccgtaccgggaacccctggacaagacctggctggaa
tggttcctggcggcgcacaccgtgccggggctggagaccttcgaggacgggcggtacacg
cgtagtctgcgaaccccgcacgggcacaccacgattcgactatcggtgcagcccgggcat
gtgcgcgcctcgctggcgctacaggacatgcgcgatctcgcgcccacggtggcgcgacta
cggcatttcctggatctggacgccgacccgatcggcatcgacgaagcgctggccgcgggc
atgtccgggggcgaggtgcggccgttcggcgaggtgcacgcggaccccgccatcacccgc
aacggcctggtactgccgccgggcatccgggtgccgggcagtctggacggctcggaactg
ctgctgcgcaccatgatcggacagcagatctcggtggcggcggccaatacccataccgca
cggctggtgcagcagctcggcgaatccattccgggaccgatcccgcatctgttccccacc
gccgccgccatcgccgagcacggggccgaggtgctgaccgggccctcccgccgcgtcgag
gcgatcgtcggcgtggcgcgggccctggccaatggcgagctggtactgcactccgcccgc
acccccgcggaattgcggcgcgacctgctcgccctggacggcgtcgggccgtggaccgcc
gactacgtgaccatgcgattgctcgccgatccggacatcctgctgcacaccgacctgatc
gtgcggcgcggcgccgccctgctcggcatcgatctcgccgatacggcgcgctgggccccc
tggcgctcgtatctgtccatgcacatgtggaagcacgccctggctcatcccacccccgcc
cccgatggcgcgaacggcgcccggaaagcgagaaccaccccctga
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