Nocardia yamanashiensis: LTV02_23465
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Entry
LTV02_23465 CDS
T07935
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LTV02_23465
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_23465
Enzymes [BR:
nya01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
LTV02_23465
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
LTV02_23465
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
LTV02_23465
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
zf-FPG_IleRS
NFACT_N
Zn_ribbon_TFIIB
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
UGT39051
LinkDB
All DBs
Position
complement(4953576..4954442)
Genome browser
AA seq
288 aa
AA seq
DB search
MPELPEIVALEQFLAEHAVGAVVGRVDVAALSVLKTFDPPVTALSGRDVTGVGHWGKHLG
MDCDGIWLITHLSRGGWLRWIDEPSAAAPKPGKGPLALRVHFFTPAGSTPAFDLTEAGTK
KRMAVWVTSDPLSIPSIARLGPDALAVSETEFGEIIHSTSQRVKNAITDQMLIAGIGNAY
SDEILHRAKLSPFANAGNLDAEQTSRLYNAMRFTLSDAIERSVGQDAARLKGEKRSGFQV
HARTGEPCPVCGDAIREVAYADKSFQYCPTCQTGGKILADRRMSRLLK
NT seq
867 nt
NT seq
+upstream
nt +downstream
nt
gtgcccgaattaccggaaatcgtggcgctcgagcagttcctggccgagcatgccgtcggt
gcggtcgtggggcgggtcgatgtcgccgcgctgagcgtgctgaaaaccttcgatcccccg
gtcacggcactgtccgggcgggatgtgaccggcgtcggccactggggcaaacacctcggc
atggactgcgacggcatttggctgatcactcatctgtcccggggcggctggttgcgctgg
atcgacgaaccgagcgccgccgcccccaaacccggcaaaggcccgctggccctgcgcgtg
cacttcttcacgcccgccggctccacccccgccttcgacctcaccgaagccggcaccaag
aaacgcatggcggtctgggtcaccagcgatccgctctccatccccagcatcgccagactc
ggccccgacgccctggcggtcagcgaaaccgagttcggcgagatcatccacagcacctcc
cagcgcgtgaagaacgccatcaccgatcagatgctcatcgccggcatcggcaacgcctac
tccgacgaaatcctgcaccgcgccaaactctcccccttcgccaacgccggcaacctcgac
gcagagcaaacctcccgcctctacaacgccatgcgcttcaccctctccgacgccatcgaa
cgctcggtaggccaggacgccgcccgcctcaaaggcgaaaaacgctccggcttccaagtc
cacgcccgcaccggcgaaccctgcccggtctgcggcgacgccatccgcgaagtcgcctac
gccgacaagtccttccagtactgccccacctgccagaccggcggcaaaatcctcgccgac
cgccgcatgtcccggctgctcaagtag
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