Nocardia yamanashiensis: LTV02_25405
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Entry
LTV02_25405 CDS
T07935
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
nya
Nocardia yamanashiensis
Pathway
nya03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LTV02_25405 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nya03021
]
LTV02_25405 (rho)
03019 Messenger RNA biogenesis [BR:
nya03019
]
LTV02_25405 (rho)
Transcription machinery [BR:
nya03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LTV02_25405 (rho)
Messenger RNA biogenesis [BR:
nya03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LTV02_25405 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATP-synt_ab
Rho_RNA_bind
Spore_III_AA
AAA_25
NACHT
S1CSD-TOTE-2
Motif
Other DBs
NCBI-ProteinID:
UGT39398
LinkDB
All DBs
Position
complement(5400468..5402327)
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AA seq
619 aa
AA seq
DB search
MTDTDLLATPGVESQNSSGSRESESGQISKMSEQTDVARSGLTPAKAESAPARSEAPKTE
AKSKAEVKTEAPAEVRENASEARESKRDEAGDNARAEGGDDNREGGQRGRGRQRRGREQR
AAAATANAEGSADAGEKTESEGGERRRDRDRNQQGERNQGGRDQQGDRQQGERNQNGGQQ
NGAPRGDRDRDRDRGGDDDERGGRRGRRFRERRRGRDRDGGVAGGGESREREPELREDDV
LQPVAGILDVLDNYAFVRTSGYLAGPNDVYVSMNLVRKNGLRRGDAITGAVRAPRDGDQS
NQRQKFDPLVRLDTVNGADVESAKRRPEFSKLTPLYPNQRLRLETQPNKLTTRIIDLIMP
IGKGQRALIVSPPKAGKTTIMQDIANAISVNNPECYLMVVLVDERPEEVTDMQRSVRGEV
IASTFDRPPSDHTSVAELAIERAKRLVEAGQDVVVLLDSITRLGRAYNNSSPASGRILSG
GVDSTALYPPKRFLGAARNIENGGSLTIIATAMVETGSTGDTVIFEEFKGTGNAELKLDR
KIAERRVFPAVDVNPSGTRRDDLLMSADEAAVLHKLRRVLSGLDSHQAIDLLVDRLKKTK
SNVEFLMTVSKTAPGAIDE
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
gtgacagatacggacctgctcgcgacacccggggtggaaagtcaaaattcctcgggaagc
cgcgaaagtgaatccggacagatttcgaagatgagcgaacaaactgacgtcgcacgatcg
gggctgactccggccaaggccgagtccgctccggcgcgcagcgaagcgccgaagaccgag
gccaagtccaaggccgaggtgaagaccgaggctccggccgaggttcgcgaaaacgccagt
gaggcgcgcgaatccaagcgtgacgaggccggggacaacgcgcgcgccgagggcggtgac
gacaaccgcgagggcggtcagcgtggccggggccggcagcgccgaggccgcgagcagcgt
gccgccgccgcgaccgccaatgccgagggcagtgcggacgccggcgagaagaccgagtcc
gagggcggcgagcgtcgccgcgaccgcgaccgcaaccagcagggcgagcgcaatcagggc
ggccgcgaccagcagggcgatcgccagcagggtgagcgcaaccagaacggtggccagcag
aacggcgccccgcggggcgaccgggaccgcgatcgtgaccgtggcggcgatgacgacgag
cgcggtggacgccgcggccggcgtttccgggagcgtcgtcgtggccgggaccgtgacggc
ggcgtggcaggtggcggcgagagccgtgagcgcgagcccgaactccgcgaggacgacgtc
ctgcagcccgtggcgggcattctcgacgtgctcgacaactacgccttcgtgcgcacctcc
ggttacctggcgggcccgaacgacgtgtacgtgtcgatgaacctggtgcgcaagaacggc
ctgcgccgcggtgacgccatcaccggtgcggtgcgcgctccgcgcgacggcgaccagagc
aaccagcgccagaagttcgatccgctggtgcgcctggacaccgtcaatggcgcggatgtc
gaaagtgccaagcgccgaccggaattcagcaagctcacgccgctgtacccgaaccagcgc
ctgcgcctggagactcagcccaacaagctgaccacccgcatcatcgatctgatcatgccg
atcggcaagggtcagcgcgcgctgatcgtgtcgccgcccaaggccggtaagaccacgatc
atgcaggacatcgccaatgcgatctccgtgaacaaccccgagtgctacctcatggtcgtc
ctggtggacgagcgtcccgaggaagtgaccgatatgcagcgctcggtgcgcggcgaggtc
atcgcctccacgttcgaccggccgccgagcgatcacacctcggtcgccgaactcgccatc
gagcgggccaagcgactggtggaagcgggtcaggacgtcgtcgtgctgctcgactcgatc
acccgattgggccgtgcgtacaacaactcgtccccggcctcgggccgaatcctttccggt
ggtgtggattccaccgcgctgtacccgcccaagcggttcctcggcgcggcccgcaatatc
gagaacggcggctcgctgaccataatcgccacggcgatggtggagaccggttccaccggt
gacacggtcatcttcgaggagttcaagggcacgggtaatgccgagctcaagctcgatcgc
aagatcgccgagcggcgcgtgttcccggccgtcgacgtcaacccgtccggcacccgccgc
gacgatctgctgatgtcggccgacgaggcggcggtgctgcacaagctgcggcgcgtgctg
tccggtctggattcacatcaggcgatcgacctgctggtcgaccggttgaagaagaccaag
agcaatgtcgagttcctgatgacggtctccaagaccgccccgggcgccatcgacgaatag
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