Nocardia yamanashiensis: LTV02_35310
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Entry
LTV02_35310 CDS
T07935
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nya
Nocardia yamanashiensis
Pathway
nya03030
DNA replication
nya03410
Base excision repair
nya03420
Nucleotide excision repair
nya03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nya00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LTV02_35310 (polA)
03410 Base excision repair
LTV02_35310 (polA)
03420 Nucleotide excision repair
LTV02_35310 (polA)
03440 Homologous recombination
LTV02_35310 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nya03032
]
LTV02_35310 (polA)
03400 DNA repair and recombination proteins [BR:
nya03400
]
LTV02_35310 (polA)
Enzymes [BR:
nya01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
LTV02_35310 (polA)
DNA replication proteins [BR:
nya03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LTV02_35310 (polA)
DNA repair and recombination proteins [BR:
nya03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
LTV02_35310 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LTV02_35310 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
DNA_pol_lambd_f
LAMTOR
Motif
Other DBs
NCBI-ProteinID:
UGT41157
LinkDB
All DBs
Position
7667974..7670712
Genome browser
AA seq
912 aa
AA seq
DB search
MTPASTDQRPSAVSATNASTEQPTLLLLDGHSLAYRAFYALPAENFKTQSGQTTNAVYGF
TAMLINLLRDEKPTHVAAAFDVSRKTFRTEAYPEYKANRATTPDEFRGQVEITQEVLGAL
GIPVMAIDGYEADDLIATLTTQAVPQGYKVLIVTGDRDSLQLVNDDVTVLYPKKGVSELT
RFTPAAVEEKYGLTPAQYPDFAALRGDPSDNLPGIPGVGEKTATKWIREYGDLETLVDKV
DTVKGKVGDALRANLSSVVLNRQLTEMVKTVPLPYAPDQLAMQPWDRDKIHRLFDDLEFR
VLRDRLFDTLAPVEPEAESGFEISGAALTPGSVADWLTDHAKAGERHGVSIVGTGTPIHG
DVKAIALAAADGEGAYIDVVALTPEDEKALGAWLADPDVPKAVHEAKAAMHALAGRGWKL
GGLTSDTALAAYLVRPGQRTFNLDDLSLRYLSRELRVEDSGEAQLSLLDEEGAADEEIAK
GEMLRARAVADLADAFDAELERIESTALLRDMELPLLTVLAELEQAGIAVDSAQLEELQR
EFADRVAEAAEAAYGVIGKQINLGSPKQLQVVLFDELDMPKTKRTKTGYTTDADALEGLY
EKTQHPFLQHLLEHRDATRLKVTVDGLLKSVADDGRIHTTFNQTVAATGRLSSTEPNLQN
IPIRTDTGRRIRDTFVVGPGYESLMTADYSQIEMRIMAHLSKDEGLIEAFNSGEDLHNFV
ASKAFDIPISDVDPELRRRIKAMSYGLAYGLSAYGLSQQLKISADEAKVQMDVYFNRFGA
IRDYLQDAVEQARKVGYTETLFGRRRYLPDLDSSNRQRREAAERMALNAPIQGTAADIIK
VAMIDTQQAIRAAGLKSRMLLQIHDELVFEVVPGEREQLEALAREHMSKAIELSVPLEVS
VGVGRSWDAAAH
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
gtgacccctgcctctaccgatcagcgtccgagtgccgtgtccgcgacaaacgcctccacc
gagcagccgaccctgctgctgctggacggtcattcgctggcttatcgcgcgttttacgcg
ctgccggcggagaacttcaagacgcagagtgggcagaccacgaatgcggtgtacgggttc
acggcgatgttgatcaaccttttgcgggacgagaagcctacccatgtggcggcggctttc
gatgtgagccggaaaacgttccggaccgaggcttatccggagtacaaggcgaatcgggct
accacgccggatgagttccgggggcaggtggagatcacgcaggaggtgctgggggcgctg
gggattccggtgatggccatcgacgggtatgaggcggatgaccttattgccacgttgacc
acgcaggcggtgccgcaggggtacaaggttttgatcgttaccggggatcgggattcgctg
cagttggtgaatgacgatgtgacggtgctgtatccgaagaagggcgtttcggagctcacc
cggttcacgccggcggcggtcgaggagaagtatgggctgacgccggcgcagtatccggat
ttcgcggcgctgcgcggggacccgagtgacaatctgccggggattccgggggtgggggag
aagaccgctaccaagtggattcgggagtacggggatctcgagacgctggtggacaaggtg
gacaccgtgaagggcaaggtgggggatgccttgcgggccaatctgtccagtgtggtgctg
aaccggcagctgaccgagatggtgaagacggtgccgctgccgtacgcgccggaccagctg
gccatgcagccgtgggatcgggacaagatccaccggctgttcgacgacctggaattccgg
gtgctgcgggatcggctgttcgacaccctcgcgccggtggagccggaggcggagtccggg
ttcgagatcagcggtgcggcgctcacgcccgggtcggtggccgactggctcaccgaccat
gccaaagccggtgagcggcacggggtttcgatcgtgggcaccggtacgcccattcacggg
gatgtgaaggcgatcgcgctcgccgccgccgacggtgagggcgcgtacatcgatgtggtc
gcgctgaccccggaggacgagaaggcgctgggcgcgtggctcgccgatccggatgttccg
aaggccgtgcacgaggccaaggccgccatgcacgcgctcgccggacgcgggtggaagctg
ggcggtctcaccagcgataccgcgctggcggcatacctggtgcgcccgggacagcgcacc
ttcaacctcgacgacctgtcgctgcgctacctgagtcgcgaactgcgcgtggaggattcg
ggcgaggcccagctgtcgctgctggacgaggaaggcgcggcggacgaggagatcgccaag
ggcgagatgctgcgcgcccgcgcggtcgccgatctcgccgatgccttcgacgccgaactc
gagcgcatcgaatccaccgccctgctgcgggatatggaactgccgctgctcaccgtgctc
gccgagctggaacaggccggcatcgcggtcgattcggcgcagctggaagaactgcagcgc
gaattcgccgaccgggtcgccgaagccgccgaagccgcctacggcgtgatcggcaagcag
atcaacctcggttcgcccaaacagctgcaggtggtgctgttcgacgaactcgacatgccc
aagaccaagcgcaccaagaccggctacaccaccgacgccgacgccctcgaagggctgtac
gagaagacccagcaccccttcctgcagcacctgctcgaacaccgcgacgcgacgcggctg
aaggtgaccgtggacggcctgctcaagtcggtcgccgacgacggccgcatccacaccacc
ttcaaccagaccgtcgccgccaccggccggctgtcctccaccgagccgaacctgcagaac
attccgatccgcaccgacaccggccgccgcattcgcgacaccttcgtcgtcggcccgggc
tacgaatcgctgatgaccgcggactacagccagatcgaaatgcggatcatggcgcacctg
tccaaggacgaggggctcatcgaagcgttcaactccggtgaggacctgcacaatttcgtg
gcgtccaaggcattcgacattccgatctccgatgtcgatccggaactgcgccgccgcatc
aaggccatgtcctacggtctggcctacggcctgtccgcgtacggcctgtcgcagcagttg
aagatcagcgccgacgaggccaaggtccagatggacgtctacttcaaccgcttcggcgcc
attcgcgactatctgcaggatgcggtcgagcaggcccgcaaggtgggctacaccgaaacc
ctcttcggccgtcgccggtatctgccggatctggactccagcaaccggcagcgccgcgag
gcagctgaacgcatggcgctcaacgcccccattcagggcacggccgccgacatcatcaag
gtcgccatgatcgacacccagcaggccatccgcgccgccggcctgaaatcccgcatgctg
ctgcagatccatgacgaactcgtcttcgaggtcgtcccgggtgaacgcgaacagctggaa
gcccttgcccgcgagcacatgtcgaaggccatcgagctttcggtgccgctcgaggtgtcg
gtcggcgtcggccgcagctgggacgccgccgcgcactga
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