Niabella yanshanensis: U0035_09720
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Entry
U0035_09720 CDS
T09723
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
nyn
Niabella yanshanensis
Pathway
nyn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nyn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
U0035_09720 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nyn03021
]
U0035_09720 (rpoC)
03400 DNA repair and recombination proteins [BR:
nyn03400
]
U0035_09720 (rpoC)
Enzymes [BR:
nyn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
U0035_09720 (rpoC)
Transcription machinery [BR:
nyn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
U0035_09720 (rpoC)
DNA repair and recombination proteins [BR:
nyn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
U0035_09720 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
WQD40423
LinkDB
All DBs
Position
complement(2391104..2395396)
Genome browser
AA seq
1430 aa
AA seq
DB search
MATKKDNRPKAAFSRITIGLASPDSILEKSFGEVLKPETINYRTYKPERDGLFCERIFGP
VKDYECACGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIKLVVPVVHIWYFKSLPNKI
GYLLGMSSKKLESIIYYERYVVIQAGVREDKGQSYGDLLTEEEYLDILDALPKDNQYLPD
DDPQKFIAKMGAESVHDLLQRIDLDQLSFDLRNSAATETSQQRKADALKRLSVVEAFRDA
NTRITNRPEWMVMQYIPVIPPELRPLVPLDGGRFASSDLNDLYRRVIIRNNRLKRLMEIK
APEVILRNEKRMLQEAIDSLFDNSRKSNAVKAEGGRALKSLSDVLKGKQGRFRQNLLGKR
VDYSGRSVIVVGPEMKMHECGLPKDMAAELFKPFIIRKLIERGIVKTVKSARKLVDKKEA
VIWDILENILKGHPIMLNRAPTLHRLSIQAFQPKLIEGKAIQLHPLVTAAFNADFDGDQM
AVHVPLSNAAVLEAQLLMLASHNILNPQNGTPITLPSQDMVLGLYYITKGKKSTETEKVR
GEGKAFYSAEEVIIAYNEKRVDLHAWIKVKTNVRNEKGGLEFKLLETTVGRVIFNQHVPE
EVGFVNALLTKKNLREIIGNIIEITNVPKTAKFLDDIKQLGFRTAFQGGLSFSINDLIIP
EIKAELLENAKGEVDEVWDNYNMGLITNNERYNQIVDIWSRVDTRLTETLIRELASDKQG
FNSVYMMLDSGARGSKQQIKQLAGIRGLMAKPRKSGSTGSEIIENPILSNFKGGLNVLDY
FISTHGARKGLADTALKTADAGYLTRRLVDVSQDVVITEEDCGTLRGINTSALKDNEDVI
EPLSDRIEGRTSLHDVFHPQTDELIIEAGTEISAAVARQIEEAGVESIEIRSVLTCESKR
GCCVRCYGKNLASGILAQRGDAVGIIAAQSIGEPGTQLTLRTFHVGGVAGSASVESTLIA
KFDGTIQFDGVRSVATTNAEGEEVKVVIGRTGEARIIDTKADRLLITNNIPYGSTLLVKD
GQKVSKGDAICSWDPYNNVIVAEVDGVLKFDNVIEGITYREESDEQTGHREKVVIETRDK
TKIPSIIVEGKTDKSYNLPTGSHIMLDEGDEVKAGKVLVKIPRILGKLKDITGGLPRVTE
LFEARNPSNPAVVSEIDGVVTMGAVKRGNREIIIEAKDGVTRKYLVPLTRQILAQDGDFV
KAGTSLSDGQVSPQDILSIQGPFAVQQYVVNEIQEVYRLQGVKINDKHVEVIVRQMMRKV
NIVDPGDTRFLEDDLVDKFEFVDENDYVYEKKVVTDPGDSAKLRAGQIISLRDLREENSV
LRRNDKKPVEFRDAQPATSSPTLLGITKASLGVQSWISAASFQETTKVLSSAAIHGKADE
MLGLKENVITGHHIPAGTGLREFENMIVGSKEEYELLQTTREAMAFDEEE
NT seq
4293 nt
NT seq
+upstream
nt +downstream
nt
atggctactaaaaaagacaatcgtccaaaagcagcgttttcaagaataactattggcctt
gcttcgcctgactctatcctggagaagagctttggtgaagtattgaagccagaaacgatt
aactaccgtacttacaaacccgaaagagatggtttgttttgcgaaagaatatttggcccg
gtaaaagattatgagtgtgcctgcggaaagtacaagcgtatccgttataagggtattgtg
tgcgaccgttgcggtgtggaagtaaccgagaaaaaagtacgtcgtgaaagaatgggacac
attaaactggtagttcctgtagttcatatctggtactttaaatcccttcctaataaaatt
ggttacctgttgggaatgagctctaagaaattagagagcattatttactacgagcgttat
gtagtaattcaggcaggtgtgcgtgaagataaagggcagagttatggtgatttgttaaca
gaagaagaatacctggatatactggatgctttacctaaagataaccagtatttacctgat
gatgatcctcagaagttcattgcaaaaatgggcgctgagtcggttcatgatttgttacaa
cgtatcgacctggaccagttatcttttgatttaagaaacagtgccgctactgaaacttct
cagcaacgtaaagcagacgccttgaagcgtttgagcgtggtagaagctttccgtgatgcc
aatacccgtattaccaaccgccctgagtggatggtaatgcagtatatcccggtaatccca
ccagaactgcgtccgctggttccattggatggtggtcgttttgcctcttctgatctgaac
gatttgtaccgtcgcgtaattatccgtaacaaccgtttaaaacgtttgatggagattaaa
gcgcctgaggtaatcttacgtaacgaaaagcgtatgcttcaggaagcgatcgactccttg
tttgacaatagccgtaaatctaatgctgttaaagctgagggtggccgtgcattgaaatct
ctttcagatgtattgaaaggtaaacagggtcgtttccgtcagaaccttttaggtaaacgt
gttgactattctggtcgttcggttatcgttgtaggtcctgaaatgaaaatgcatgagtgc
ggtttgccaaaagatatggcagctgagctgtttaagccatttatcattcgcaaattgatt
gaaagaggaatcgtaaaaaccgttaaatctgcaaggaagctggtagataaaaaagaagcg
gttatctgggatatccttgaaaatattctgaaaggtcacccgatcatgttgaaccgtgcc
ccaacactgcaccgtttatctatccaggccttccagcctaaactgattgaaggcaaagcc
atccagttacacccattggttacagcggcatttaacgccgactttgatggtgaccagatg
gcggtacacgtgcctttgagcaacgcggcggtattggaagcccagttattgatgctggct
tctcataatattctgaaccctcagaatggtacgccaatcacccttccttcgcaggacatg
gtactcggtttgtattatattaccaagggtaagaaatcaaccgagactgaaaaagtacgt
ggcgagggtaaggctttttattctgcagaagaagtgatcattgcttacaatgaaaagcgt
gtcgaccttcatgcctggattaaagtaaaaaccaatgttcgtaacgaaaaaggcgggctg
gagtttaaattattagaaacaactgttggccgtgttatatttaaccagcatgttcccgaa
gaagtgggatttgtaaacgcactgttgacaaagaaaaaccttcgtgagatcattggtaat
atcatcgagatcactaacgttcctaaaacagcgaaattcctggatgatatcaagcagtta
ggtttccgtactgccttccagggtggtttatcgttcagcattaatgacctgatcattccg
gaaattaaagctgagttactggagaacgccaaaggtgaagtggatgaggtttgggacaac
tataacatggggcttattaccaacaacgaacgttataaccagatcgtagatatctggagc
cgtgtggatacgaggttgaccgaaaccttgattcgtgagctggcctcagacaaacaagga
tttaactcggtttacatgatgctggattccggagcccgtggttctaaacagcagatcaaa
cagctggctggtatcagggggctgatggctaaaccaagaaaatccggttctaccggttct
gagatcattgaaaacccgatcctttctaactttaaaggcggtttgaatgtattggattac
tttatctctacacacggtgcgcgtaaaggtttggcggatacggctctgaaaacggcggat
gcaggttacttaacccgtcgtctggtggacgtttctcaggacgtggtaattactgaagaa
gattgcggtaccttacgtggtattaatacatctgctttaaaagataacgaagatgtgatc
gaaccattatcagacaggattgaaggacgtacctcattgcatgatgtattccatcctcaa
actgatgagctgattattgaagcaggtacggaaatctcagcagcagtagcaagacaaatt
gaagaagccggcgttgagtctattgaaatacgttctgtattaacctgcgaaagcaagcgc
ggatgttgcgttaggtgttatggtaaaaacctggcttccggcatattggcgcaaagaggt
gacgcggtgggtatcatcgctgcacagtcaatcggtgaaccaggtacacagttaacactt
cgtaccttccacgtgggtggtgttgccggttctgcttctgtagaatctacattgatcgct
aagtttgacggtacgatacagtttgacggtgtgcgctctgttgctacaaccaatgctgaa
ggcgaagaagtgaaagtggttattggtcgtaccggtgaagcgcgtatcattgatactaag
gcggacaggttattaattactaacaacattccttatggttctaccttgttggtgaaagat
ggccagaaagtctccaaaggagatgcgatctgctcatgggatccttataacaacgttatc
gtagcagaggtagatggtgtgttgaaatttgataatgtaattgaaggtatcacctaccgc
gaagaatctgatgagcaaacaggtcaccgtgaaaaagtggtaatcgaaaccagagataaa
acgaaaattccttccatcatcgtagaaggtaaaacggataaatcttacaacttacctacg
ggctctcatattatgctggatgaaggtgatgaggtgaaagcgggtaaagtgttagtgaaa
atccctcgtatcttaggtaaactgaaagatatcacgggtggtctgcctcgtgtaacagaa
ttgtttgaggctcgtaacccaagtaaccctgcggtggtttctgagattgatggtgtggta
actatgggtgctgtaaaacgtggtaaccgtgaaatcatcattgaagctaaagatggcgtt
accagaaaatacctggttcctttaacacgccagatcctggctcaggatggtgattttgtg
aaagccggtacttctttaagtgatggtcaggtttctcctcaggatatcctttctattcag
ggaccgtttgctgtacaacagtatgttgtgaacgagatacaggaggtttatcgtttacag
ggggtgaaaatcaacgacaaacacgttgaggtgatcgttcgtcaaatgatgcgtaaagta
aacatcgttgatccgggagacacccgtttccttgaagatgacctggtagataaatttgaa
tttgttgacgaaaatgattacgtatacgagaagaaagtagttaccgatccgggtgactct
gctaaacttcgcgcaggtcagatcatcagcttacgcgacctgagagaagaaaactctgta
ttacgtcgtaatgataaaaagcctgttgagttcagggatgcacaacctgcaacttcatcg
cctacattactgggtattacaaaagcttctttgggcgtacaaagctggatttctgcggca
tcgttccaggaaacaactaaagtgttgtcttctgcagctatacacggtaaagcagatgaa
atgctgggcttgaaagagaacgtaattaccggtcatcacattcctgccggtactggtttg
cgtgagtttgaaaacatgatcgtaggaagcaaagaagaatacgaactgttacaaactacc
cgtgaagctatggcatttgatgaggaagagtaa
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