Niabella yanshanensis: U0035_19130
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Entry
U0035_19130 CDS
T09723
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
nyn
Niabella yanshanensis
Brite
KEGG Orthology (KO) [BR:
nyn00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nyn03016
]
U0035_19130
Enzymes [BR:
nyn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
U0035_19130
Transfer RNA biogenesis [BR:
nyn03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
U0035_19130
Prokaryotic type
tRNA splicing ligases
U0035_19130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
WQD37784
UniProt:
A0ABZ0W5G4
LinkDB
All DBs
Position
complement(4587378..4588829)
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AA seq
483 aa
AA seq
DB search
MSKLSLTGKELRNIGYPEGPVISIAMNIMQKAYKHESKETALAVLSSILASPQDYSTDEI
LGVIANQLLPQQELEHNGISLNQTGIQFNIFGQEHIEEGAMHQMYTAAKLPVAVAGALMP
DAHHGYGLPIGGVLATENVVIPYGVGVDIGCRMCLSIFDINPQELVQREHYFAREINEAT
LFGSGAQFKQAADHEVMDHEAFGLLPLLKQLHGRAWKQLGTSGSGNHFVEFGEVSIAETD
GILQLPAGQYLGLLSHSGSRGLGSNIANHYTKVAVSKRRLPLEAKNLAWLDMAEAEGQEY
WLAMNLAGDYASACHHIIHDKIAKQLGRKPLKMVENHHNFAWKEILDGKEVIVHRKGATP
AGKNVLGIIPGSMTAPGFIVKGKGEAASINSASHGAGRKLSRTKAMQSITEKQLRDELVK
HNVTLLGGGLDEAPFAYKDIEEVMKGQKALVDIVGRFTPKIVKMDGTPVRTRKSQKQDIA
EGE
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaattaagcttaaccggaaaggaattaagaaatatcggttatcccgaagggccc
gttatttcgatcgctatgaatattatgcaaaaagcatacaaacatgaaagcaaagaaaca
gcgctggccgttttaagcagcattctggcttcaccgcaagactatagtactgatgaaata
ttaggtgtcattgctaatcaactgttgcctcaacaagagttagagcacaatggcatttcg
ctgaatcaaacaggtatccaatttaatattttcggacaggaacatatagaggaaggcgcc
atgcaccaaatgtatacggcggctaaattgccggtagcagtagcgggtgcactgatgccc
gatgcccatcacggctacgggctgcctattggaggcgtactggcaactgaaaacgttgtg
atcccttacggcgtgggcgtggatattggctgcaggatgtgcctgagcatttttgacatc
aacccccaggagctggtgcaacgcgagcattatttcgcgagggagatcaatgaagcgaca
ctatttggtagcggcgcccagtttaaacaggccgctgatcacgaagtgatggatcatgaa
gcctttggcttactgcctttgttaaagcaattacatggacgggcctggaaacaactgggt
accagtggaagcggcaatcattttgttgaatttggtgaggtaagcattgccgaaacggat
ggcatcctgcaattaccggcagggcaatacctcggactgctttcccactcaggatcaaga
ggtcttgggtctaatatcgccaatcactataccaaagtggcagtcagcaaaagacgttta
ccgctggaagcgaaaaacctggcgtggctggacatggctgaagctgaaggacaggaatac
tggctggccatgaacctggcaggcgactatgcatcggcctgtcaccatatcatacatgat
aaaatagcaaagcaactgggtcgcaaacctttaaagatggtagaaaaccatcacaatttt
gcctggaaggaaatactggacggtaaagaagtgattgtacatcgtaaaggtgccacaccg
gccggtaaaaacgtgctgggcattataccgggcagcatgacggcaccaggttttatcgta
aagggtaaaggtgaagcagcatctatcaactctgcctcgcatggcgcgggcagaaagctg
agccgtaccaaggccatgcaaagtattacggaaaaacagctgagggatgaactggtaaaa
cacaatgtcaccttgctgggcggcggtttggacgaagcgccttttgcctataaggatatt
gaagaagtgatgaaagggcaaaaggcattagtagatatcgttggacgctttacacctaaa
atcgtaaagatggatggcacacccgttagaacccggaaatcgcaaaagcaggacatagct
gagggcgaataa
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