Niabella yanshanensis: U0035_20965
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Entry
U0035_20965 CDS
T09723
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nyn
Niabella yanshanensis
Pathway
nyn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nyn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
U0035_20965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nyn03019
]
U0035_20965
03009 Ribosome biogenesis [BR:
nyn03009
]
U0035_20965
Enzymes [BR:
nyn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
U0035_20965
Messenger RNA biogenesis [BR:
nyn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
U0035_20965
Ribosome biogenesis [BR:
nyn03009
]
Prokaryotic type
rRNA helicases
U0035_20965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
ATP-grasp_6
Motif
Other DBs
NCBI-ProteinID:
WQD38143
LinkDB
All DBs
Position
5081356..5083017
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AA seq
553 aa
AA seq
DB search
MTTFESLGIEAGLLQSLETIGFVTPTPIQEQAIPVLLQGTKDFVGLAQTGTGKTAAFGLP
LLQLINKEQRTPQALVICPTRELCLQIAKDLANFKAKKGSIGVTAVYGGASISDQIREIK
RGTNIIVATPGRLIDLIERKAINLEGIHYVVLDEADEMLNMGFKDDIEFILKETINRESI
WLFSATMPPAIRQVSKRYMDNPHEITVGKVNSGNANIDHQYYATQHVNRYETLKRIIDFN
PGLYGIIFTRTKADAQNVTESLIREGYDIEALHGDLTQAQRDKVMGRFREKSIQLLIATD
VAARGIDVKEITHVINYELPDDTEVYTHRSGRTGRAGKSGVSVSLVTPREIYRLRQIEKL
VNTKFHKMDIPSGKDVCRKQFFHFIDKMLQADISNGEYATYLPILQEKFADVDKEEIMQR
VAALEFDRFLKYYENAADLNIRDSGKGSRESRSAERGGRESRSSRSSNGNYQRLFVNLGT
KDGFYKASFLQFILDMSGLSKDVLGKIDMKDMNSWVEIEPSAGNKMIKALDGKNYRGRKI
RMNDAENGGGRRR
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacaacatttgaatcattagggattgaggctgggctgcttcaatctctggaaactatc
ggtttcgtaacacccacacccattcaggaacaagccattcccgttttattacaaggtacc
aaagattttgtaggtttagcacaaaccggaaccggtaaaaccgctgcgtttggattgccc
ttattgcaacttattaataaggaacagcgtacgccgcaggcccttgttatttgcccaaca
cgggagttgtgcctgcagattgctaaagacctggctaatttcaaagcaaaaaaaggttct
attggagtaaccgcagtgtatggtggcgcctctatatccgatcagatcagggaaattaaa
aggggaaccaatatcattgtagctacgcctggccgtttgattgatttaattgaacgcaaa
gccatcaatttagaaggtattcactatgtagtattagatgaagccgacgaaatgctcaat
atgggctttaaggatgatattgaatttattcttaaagaaacgataaaccgggaaagtatc
tggctgtttagtgcaacaatgcctcctgcgatcaggcaggtgagcaagcgatatatggat
aatccccatgaaattaccgtaggtaaggtcaattcaggaaatgccaatattgatcaccag
tactatgctacccagcatgtgaaccgctatgagactttaaagcgtatcatagattttaac
cccggtctttacggtattatttttaccagaaccaaggccgacgcacaaaatgtaaccgaa
agcctcattcgtgaaggctatgatattgaagcgttacatggtgatttaacacaggcccag
cgcgataaagtgatggggcgttttcgtgagaagtcaatccagctgttaattgctacagat
gtggcagcaagaggaatagatgtaaaagaaattacgcacgttatcaattatgaattaccg
gatgatacggaagtttacacgcaccgaagcggaagaacaggtcgcgccggaaaaagcggg
gtttccgtttcattagtgactccaagagaaatataccgtttacgccagatcgaaaaactg
gtgaatacgaagtttcataaaatggatattccgagtggtaaagatgtttgccgcaaacag
ttttttcattttatcgataagatgttacaagctgacatcagcaatggtgagtatgccacg
tatctccccatcctgcaggaaaaatttgcagacgtagataaagaagagatcatgcaacgg
gtagccgcattagagtttgatcgcttcttaaaatactacgagaacgctgcggatttaaat
atccgtgattcgggtaaaggtagcagggaaagccgctctgccgaaaggggaggaagagag
agtcgcagctccaggagcagcaatggcaattaccagcgtctatttgtaaacctgggtacc
aaagatggtttctataaagcaagcttcctacagtttattttagatatgagtggtttgagt
aaagatgtactggggaaaatagatatgaaggacatgaacagctgggttgaaatagaacca
tctgccggtaataaaatgatcaaagcactggacggtaaaaactatcgtggcaggaaaatt
cgtatgaacgacgctgaaaacggcggcggacgcagaagataa
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