Nocardia yunnanensis: D7D52_00890
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Entry
D7D52_00890 CDS
T09774
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
nyu
Nocardia yunnanensis
Pathway
nyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D52_00890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nyu03019
]
D7D52_00890
03009 Ribosome biogenesis [BR:
nyu03009
]
D7D52_00890
Enzymes [BR:
nyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
D7D52_00890
Messenger RNA biogenesis [BR:
nyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D7D52_00890
Ribosome biogenesis [BR:
nyu03009
]
Prokaryotic type
rRNA helicases
D7D52_00890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
Cas3-like_C_2
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
AYF72673
UniProt:
A0A386Z612
LinkDB
All DBs
Position
complement(205718..207517)
Genome browser
AA seq
599 aa
AA seq
DB search
MSTSPADSAPTDDERDVSGPSFADLGLDDRILRAIADVGYESPSPIQAATIPPLLDGHDV
VGLAQTGTGKTAAFAIPVLQGLNESGKAPKALVLAPTRELAIQVAEAFGRYATHMPGVHV
LPIYGGQNYAVQLSGLRRGAQVVVGTPGRVIDHLERGTLDLTELQYLVLDEADEMLKMGF
QEDVERILRDTPAEKQVALFSATMPTAIRKISKQYLKEPVEITVKTKTSTNTNITQRWVL
VSYQRKLDALTRILEVEPFEAMIIFVRTKQATEELAEKLRARGYSAAAINGDIAQAQRER
TIGQLKSGVLDILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAGRSGEAL
LFVAPRERRLLDAIERATRQQVTEMQLPSVEDVNAQRVTKFHDAITENLNSANVPLFRKL
IEEYEREHNIPLADIAAALAVGGHEGDTFFMEPDPEPAPRERRDRDRGPRAFDERGPRER
REPSQHRQTGAELATYRISVGKRHKVAPGAIVGAIANEGGLRRSDFGHISIRPDHSLVEL
PADLSDETLNALSRTRISGQLIQLQLDQGPPGQQRPLSRAPRREFRDSKPRYERRKPRS
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atgagtacctcaccggccgacagcgctcccactgacgacgagagggacgtttccggcccg
tccttcgccgatctcggcctcgatgaccgcatcctgcgggccatcgcggatgtcggctac
gaatcgccgtcgcccattcaggcagcgacgattccgccgctgctggacggccacgacgtg
gtgggtctggcccagaccggtaccggtaagacggccgccttcgccatccccgtgctgcag
ggcttgaacgagtccggcaaggccccgaaggcgctggtgctggccccgactcgcgaactg
gcgatccaggtggcggaggcgttcggccggtacgccacgcacatgcccggcgtgcacgtg
ctgcccatctacggcgggcagaactacgcggtccagctgtcgggtctgcggcgcggcgca
caggtggtggtcggcaccccggggcgcgtcatcgatcacctcgagcgcggcaccctcgac
ctcaccgagctgcagtacctggtgctcgacgaggccgacgagatgctcaagatgggcttc
caggaggacgtcgaacgcattctgcgcgacacccccgccgagaagcaggtcgcgttgttc
tcggccaccatgccgacggcgatccgcaagatctccaagcagtatctgaaggaaccggtc
gagatcacggtcaagaccaagacctccaccaacaccaacatcacccagcgctgggtgctg
gtgtcgtatcagcgcaagctggacgcgctgacccgcatcctcgaggtcgagcccttcgag
gcgatgatcatcttcgtgcgcaccaagcaggccaccgaggagctggccgaaaagctgcgc
gcgcgtgggtattccgcggccgccatcaacggcgatatcgcgcaggcgcagcgtgagcgc
accatcggccagctcaagtcgggcgtgctcgacatcctggtcgccactgacgtggccgcc
cgcggcctggacgtggaccgcatctcgcacgtcgtgaactacgacatcccgcacgacacc
gagtcctacgtgcaccgcatcggccgcaccggccgcgcgggccgctccggtgaggcgctg
ctgttcgtggccccgcgcgagcgccggctgctggacgccatcgagcgcgccacccgccag
caggtcaccgagatgcagctgcccagcgtcgaggacgtcaacgcgcagcgcgtcaccaag
ttccacgacgccatcaccgagaacctgaactcggccaatgtgccgctgttccgcaagctc
atcgaagagtacgagcgggaacacaatattccgctggcggacatcgccgcggcgctcgcg
gtcggcggccacgagggcgacaccttcttcatggaacccgatccggagcccgcgccgcgg
gaacgccgcgaccgggaccgggggccgcgcgccttcgacgagcgtggaccgcgcgagcgc
cgcgagccgtcgcagcaccgccagaccggcgccgagctggccacctaccgcatctcggtg
ggcaagcggcacaaggtcgcgccgggcgcgatcgtgggcgccatcgccaacgagggcggc
ctgcgccgcagcgacttcgggcacatcagcatccggcccgaccattcgctggtggaactg
cccgccgacctctcggacgagaccctgaatgccttgagccgcacccggatcagcggccag
ctcatccagctgcagctcgaccagggcccgcccggacagcagcgccccttgagccgcgcc
ccgcgccgcgaattccgcgacagcaagccgcgttacgagcgccgcaagccgcgctcgtaa
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