Nocardia yunnanensis: D7D52_02355
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Entry
D7D52_02355 CDS
T09774
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nyu
Nocardia yunnanensis
Pathway
nyu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nyu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D7D52_02355 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nyu03400
]
D7D52_02355 (mfd)
Enzymes [BR:
nyu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D7D52_02355 (mfd)
DNA repair and recombination proteins [BR:
nyu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D7D52_02355 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
MFD_D3
LSDAT_prok
AAA_22
UB2H
DUF3638
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AYF72899
UniProt:
A0A386Z8U2
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All DBs
Position
complement(511792..515409)
Genome browser
AA seq
1205 aa
AA seq
DB search
MTTDRPPLAGLAAVAGADAALTQVASLIGRESAMLVAPSAVRPFVASTIAGQRPLLVVTA
TGREADDLAVELTEMLGDTVALFPSWETLPHERLSPGADTVGRRLQVLRRLAHPEDPGTP
GPLRVVVTTVRSLMQPMAAGLGDIEPIVLHQGAEFDFDELLTRLVEFAYERVDMVGKRGE
FAVRGGILDVFPPTADHPVRVEFWGDEVSELRAFSVQDQRSIHEVPVELVVAPPCRELLL
TTALRERAAQVAAENAADAALVEMLDKIAEGIPVEGMEALLPVLQPGELQLLVDALPAET
HVLLCDPEKVRTRAADLVRTGEEFLEASWTAASFGAAAPLGAHGLDLAASGYRGLDVVHA
DAERRGLPWWTLSPLAADDPNEIVLPVLAAASARGSEELVATIFASLRAQVATGGRAVIV
VAGHGTVQRILERLADAEVPAASLEAGAEPVPGVVGVLCGSLHDGIVFDDAKLVVIAESD
LTGNRVTAPGEGKKLPARRRNQVDPLALTAGDMVVHDQHGIGRFVEMIERTVGGARREYL
VIEYAPSKRGQPGDRLFVPMDSLDQLSRYVGGEMPSLSKLGGSDWANTKRKARKAVREIA
TELVQLYAARQAAPGHAFAPDTPWQQEMEDAFAFTETVDQLSAIAEVKSDMEKAVPMDRV
ICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLAQQHLQTFTERMAGFPVVVKGLSR
FTDAAESREILEGMTTKDVDIVVGTHRLLQTGVRWKDLGLVIIDEEQRFGVEHKEHIKAL
RTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERHPVLTYVGAYNDKQVAAAIRRE
LLRDGQVFYVHNRVSSIDKAAKRIRDLVPEARVVVAHGQMNEDNLEKTVQGFWEREFDVL
VCTTIIETGLDISNANTLIVERADALGLSQLHQLRGRVGRSRERGYAYFLYPPEKPLTET
AYDRLATISQNSDLGAGMAVAMKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRLVGEAVEA
YRAAADGRPITVDEEVREVRIDLPVDAHIPPDYIASDRLRLEAYRKLAAAQDDSGLSAVV
EELVDRYGPLPVETARLVSVAKLRLLARAYAIAEIGVTGTTLKVSPLQLPDSKQLRLKRL
YPNATYRPATGIVQLPLPRVEDSVGAARVRDVQLLQFVADLLLALDGKAPGAVDVKVPTE
VLAPR
NT seq
3618 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgatcgtccacctttggcgggactggctgcggtggccggtgccgatgccgcg
ttgacgcaggtcgcgagcctgatcgggcgggagtcggccatgttggtcgcgccgtcggcg
gtgcggccgttcgtggcgtcgaccattgcggggcagcggccgctgctggtggtgacggcc
accgggcgggaggccgacgatctggcggtcgagctgaccgagatgctgggggatacggtc
gcgctgttcccgtcgtgggagacgctgccgcacgagcggctgtcgccgggcgcggacacg
gtgggccggcggttgcaggtgttgcggcggctggcgcatccggaggatccggggacgccg
ggtccgctgcgggtggtggtgaccacggtgcgctcgctcatgcagccgatggcggcgggg
ctgggggatatcgagcccatcgtgctgcaccagggcgcggagttcgatttcgacgaattg
ctcacgcggctggtggaattcgcctacgagcgggtcgacatggtcggcaagcgcggtgag
ttcgcggtgcgcggcggcatcctcgacgtcttcccgccgacggcggatcatccggtgcgc
gtggagttctggggcgacgaggtctccgagctgcgcgccttctccgtgcaggatcagcgc
tccatccacgaggtgccggtcgaactggtggtcgcgccgccgtgccgggaactgttgctc
accaccgcacttcgcgaacgcgccgcccaggtcgccgccgagaacgccgccgacgcggcg
ctggtggagatgctcgacaagatcgccgagggcatcccggtcgagggcatggaggccctg
ctgccggtcctgcagcccggcgagctgcaactactggtggacgcgctgcccgcggaaacc
catgtgctgctgtgcgatccggagaaggtccgcacccgcgccgccgacctggtgcgcacc
ggcgaggagttcctggaggcgtcctggacggcggcctccttcggcgcggccgccccgctc
ggcgcgcacggcctggacctggccgcctccggctaccgcggcctggacgtggtgcacgcc
gacgccgaacgccgcggcctgccctggtggacgctgagcccgctggccgccgacgacccg
aacgagatcgtgctgccggtgctggccgccgcgtccgcccgcgggtccgaggaactggtc
gccaccatcttcgcctcgctgcgcgcccaggtagcgaccggcggccgcgcggtcatcgtg
gtggcgggacacggtacggtgcaacgcattctggaacgcctcgccgacgccgaggtgccc
gccgcctcgctggaggccggggccgaaccggtgccgggcgtggtcggggtgctctgcggc
tcgctgcacgacggcatcgtcttcgacgacgccaaactggtggtgatcgccgaatccgat
ctcaccggcaaccgcgtcaccgcgcccggcgagggcaagaagctgcccgcccgccgccgc
aaccaggtcgacccgctggcgctcaccgccggcgacatggtggtgcacgatcagcacggc
atcgggcgcttcgtggagatgatcgaacgcaccgtcggcggggcgcgccgcgagtacctg
gtcatcgagtacgcgcccagcaagcgcgggcagccgggcgatcgcctgttcgtgccgatg
gattcgctggatcagctgtcccgctacgtcggcggcgagatgccgtcgctgtccaagctc
ggcggctcggactgggccaacaccaaacgcaaggcgcgcaaggcggttcgcgagatcgcc
accgaactggtgcagctctacgccgcccggcaggccgcgcccggccacgccttcgccccg
gacacgccgtggcagcaggagatggaggacgcgttcgcgttcaccgagaccgtcgatcag
ctctcggccatcgccgaggtgaaatccgatatggagaaggccgttccgatggaccgcgtc
atctgcggtgacgtcggctacggcaagaccgagatcgcggtgcgcgccgcgttcaaggcg
gtgcaggacggcaagcaggtcgcggtgctggtgccgaccacgctgctggcgcaacagcat
ctgcagaccttcaccgagcgcatggccggcttcccggtggtggtgaagggcctgtcgcgc
ttcaccgatgcggccgaatcgcgcgagatcctcgagggcatgaccaccaaggatgtcgac
atcgtggtgggcacgcaccggctgttgcagaccggcgtgcgctggaaggacctgggcctg
gtcatcatcgacgaggagcagcgtttcggcgtcgagcacaaggagcacatcaaggcgctg
cgcacgcacgtggacgtgttgaccatgtccgccacgccgattccgcgcaccctggagatg
tcgctcgcgggcatccgcgagatgtcgaccatcctcaccccgccggaagaacgccatccc
gtgctcacctatgtgggcgcgtacaacgacaagcaggtggcggccgccatccgccgtgag
ctgctgcgcgacggccaggtgttctacgtgcacaatcgggtctcctcgatcgacaaggcc
gccaagcggattcgcgatctggtgccggaggcgcgcgtcgtcgtcgcgcacgggcagatg
aacgaggacaatctcgagaagaccgtgcagggcttctgggagcgggaattcgatgtgctg
gtgtgcaccaccatcatcgaaaccggtctggacatctccaatgccaacacgctgatcgtg
gaacgcgccgacgcgctgggtctttcgcagttgcaccagctgcgcggccgtgtcgggcgc
tcgcgggagcgcggctacgcctacttcctgtacccgccggagaagccgctcaccgagacc
gcctacgaccggctcgccaccatttcgcagaactcggatctgggcgcgggcatggcggtc
gccatgaaggacctcgagattcgcggcgcgggcaatgtgctgggcgccgagcagtccggg
catgtcgcgggcgtgggcttcgacctgtacgtgcggctggtcggcgaggcggtggaggcg
tatcgcgccgccgccgacggccgcccgatcacggtggacgaggaggtcagggaggtccgc
atcgatctgcccgtcgacgcgcacatcccgcccgactacatcgcctcggaccggctgcgc
ctggaggcgtaccgcaaactggccgccgcccaggacgattcgggcctctcggcggtggtc
gaggagctggtggaccgctacggcccgctgccggtggaaaccgcccgcctggtctcggtc
gccaagctccgcctgctggcccgcgcgtacgccatcgccgaaatcggcgtcaccggaacc
accttgaaggtttcgccgctgcaactacccgactccaagcagctgcgcctcaagcgcctc
taccccaacgccacctaccgccccgccaccggcatcgtccagctgcccctgccccgggtg
gaggacagcgtcggcgcggcccgggtccgcgacgtccaactcctccagttcgtcgccgac
ctcctcctcgcgctggacggaaaagccccgggcgcagtcgatgtcaaggttcccacggag
gtgctcgccccccgatga
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