Nocardia yunnanensis: D7D52_13820
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Entry
D7D52_13820 CDS
T09774
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
nyu
Nocardia yunnanensis
Pathway
nyu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nyu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7D52_13820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nyu03019
]
D7D52_13820
Messenger RNA biogenesis [BR:
nyu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7D52_13820
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
RMMBL
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
AYF79014
UniProt:
A0A386ZPA6
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All DBs
Position
2990040..2992166
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AA seq
708 aa
AA seq
DB search
MARRPRRTASRAAGAPAPAPEAPAQPAAQPDSAAPAAANAAAASAESSAPAADKSNTAAA
QPDTARTESVAAEPVRERNGRGRNGSAGKAATKPADEAPRSRQDDSRSRQDDSRSRQDDS
RSRGGDRNRRGGGRGRQGGRDREPAPAPRDPHAMGTPPKAPKGGLRVFALGGIGEIGRNM
TVFEYDGKLLIVDCGVLFPEDQQPGVDLILPDFGPIENRMDDIAAVILTHGHEDHIGAVP
FLLRLRRDIPVIGAKFTLALVAAKCREHRLQPNLTEVTEGQHTTHGPFGCEYFAVNHSIP
DAIAVAIRTPAGIALHTGDIKLDQLPLDGRLTDLAGFSRLGDEGVDLFLVDSTNAEVPGF
VTPEREIGPVLDNVIGKAKGRVIVASFASHVHRIQQVVDVAQRYDRRVCFVGRSMVRNMQ
IAQDLGYLDIPDNIVVDLDQAANLPVHKLVLISTGSQGEPLSALSRMARGDHRQINIRPD
DLVVLASSLIPGNENAVFAVVNGLARLGATVVTQQNAKVHVSGHASAGELLYLYNAVRPT
NAMPVHGEWRHLRANGALAVATGVPEERVILAENGVVVDLVDGIASISGRVPVGQVYVDG
LSVGDVGESTLSDRLVLGEGGFISINVAIDSATGKAVSTPEVTGRGFSDDPEALTGAQEL
VESELHRLTVEGVTDTHRIAQSVRRVVGRWVAETYRRRPMIVPTVIGV
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atcgcccgccgcccgcgtcgcaccgccagccgcgccgccggcgctcccgccccggccccc
gaagccccggcgcagcccgccgcccagccggactccgctgctccggctgccgcgaatgcc
gctgccgcgtcggccgagtcgtcggctccggccgccgacaagtcgaataccgctgccgcc
cagccggatacggctcgcacggaatccgttgccgccgaaccggttcgggaacgcaatggc
cgaggccgcaacggctccgccggcaaggccgcgaccaaaccggccgacgaggccccgcgc
tcgcgccaggacgattcccgctcgcgccaggacgattcccgctcgcgccaggacgattcc
cgctcgcggggtggcgatcgcaaccgtcgcggcggcggccgtggccgtcagggcggccgt
gatcgcgaacccgccccggccccgcgtgacccgcacgccatgggcaccccgcccaaggcc
cccaagggcggcctgcgggtgttcgcactcggcggcatcggtgaaatcggccgcaacatg
accgttttcgagtacgacggcaagctgctgatcgtcgactgcggtgtgctgttccccgag
gatcagcagcccggcgtcgacctgatcctgcccgatttcggtcccatcgagaaccgcatg
gacgatatcgccgcggtgatcctgacccacgggcacgaggatcacatcggcgcggtgccg
ttcctgctgcggctgcgccgcgacatcccggtcatcggcgcgaagttcaccctcgcactg
gtggcggccaagtgccgcgaacatcgcctgcagcccaacctgaccgaggtcaccgagggc
cagcacaccacgcacggcccgttcggctgcgagtacttcgcggtcaaccactcgatcccc
gacgccatcgcggtcgcgatccgcacgcccgcgggtatcgcgctgcacaccggtgacatc
aagctggatcagctgccgctcgacggccgcctcaccgacctggccgggttctcccgcctg
ggcgacgagggcgtggatctgttcctggtggactccaccaatgccgaggtgcccggtttc
gtcacgcccgagcgcgagatcggcccggtgctcgacaatgtgatcggcaaggccaagggc
cgggtcatcgtggcctccttcgcctctcacgtgcaccgcattcagcaggtggtggatgtg
gcgcagcgctacgaccgccgggtgtgcttcgtgggccggtccatggtccgcaatatgcag
atcgcccaggatctcggctatctcgacattccggacaatatcgtggtggatctggatcag
gccgcgaatctgccggtgcacaagctggtgctgatctccaccggttcgcagggcgagccg
ctctcggcgctgtcgcggatggcgcgtggcgatcaccgccagatcaatatccggcccgac
gatctggtggtgctggcctcctcgctgattccgggcaacgagaacgcggtcttcgccgtc
gtgaacggcctggcccgcctgggcgccacggtcgtcacccagcagaacgcgaaagtccat
gtgtcgggccatgcttcggccggcgagctgctctacctctacaacgcggtacggcccacc
aacgccatgcccgtgcacggcgagtggcggcacctgcgcgccaacggcgcgctcgcggtg
gcgaccggcgtccccgaggagcgggtcatcctggcggagaacggcgtcgtggtcgacctg
gtcgacggcatcgcctcgatctccggccgcgtccccgtcggccaggtctatgtcgacggc
ctctcggtcggcgatgtcggcgaatccaccctctcggatcgtctggtcctgggtgagggt
ggtttcatctccatcaatgtcgccatcgattcggccaccggcaaggcggtcagcaccccc
gaggtcaccggccgcggcttctccgacgaccccgaagccctcaccggtgcacaggaactc
gtcgagagcgaactgcaccgcctgaccgtcgagggcgtcaccgacacccaccgcatcgcc
caatccgtccgccgcgtggtgggccgctgggtcgccgaaacctaccgccgccgccccatg
atcgtccccacggtcatcggcgtctag
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