Neisseria zalophi: D0T92_07860
Help
Entry
D0T92_07860 CDS
T06266
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
nzl
Neisseria zalophi
Pathway
nzl03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
nzl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
D0T92_07860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nzl03400
]
D0T92_07860
Enzymes [BR:
nzl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D0T92_07860
DNA repair and recombination proteins [BR:
nzl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
D0T92_07860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
Glyco_tran_WecG
AAA_30
Helicase_C_2
Motif
Other DBs
NCBI-ProteinID:
QEY27198
UniProt:
A0A5J6PWK9
LinkDB
All DBs
Position
complement(1685873..1689268)
Genome browser
AA seq
1131 aa
AA seq
DB search
MTYSIPAPAQKSHWNGLSRGSLPWALAQYLPEKKLKVILTQDVEQALRLHTAWQFFRPQD
NAVFLPDWETLPYERFSPHHDLVSERLSALWQVKNGQADVLIVPVSTAMQKLAPVSFLLG
RTFWLKTGQTLDIEALRENLVEAGYSNVSNVIAAGEFAMRGGILDIFPMGSELPYRLDLF
GDEIDSIKTFDPDSQRTLAPISEIRLLPAHEFPSDDDAQKIFRARFREEIDADYNAAAVY
KAVSSGHYGAGVEYYLPLFFENELATLFDYIGEDALLVFVGDVYAEASRFWGDVKTRFQM
AQGDETYPPLHPRHLYLSEDQFAGRLKLYPQILPDFSAPEHQLPDVAVNRQSETPLAALK
HFQTAFNGQVLLCAESAGRRETMLGFFAQHGLKPQSVDGWQAFLDSGVALAITVTPLAYG
FQLPDQPPLAVITESDLYQYVARSRNVRRRKHAAVSDGLLRDLAEINIGDPVVHEEHGIG
RYMGLVNMDLGEGENEMMLLEYANEAQLYVPVSQLHLISRYSGHAHENVQLHRLGTAAWN
KAKRKAAEKARDTAAELLNLYAQRAAQEGFKFPLNEIDYQAFSDGFGYEETEDQAAAIAA
VLKDLTQGKPMDRLVCGDVGFGKTEVALRAAFVAVMGGKQVAVLAPTTLLVEQHDKNFSD
RFADFPVKVASLSRFNSSKQTKATLAGMADGTVDIVIGTHKLVQDDIVFKNLGLVIIDEE
HRFGVRQKEQLKRLRANVDILTLTATPIPRTLSMALEGLRDFSLITTAPSRRLAVKTFVK
PFSEASVREAVLRELKRGGQVFFLHNEVDTIENMRERLETLLPEARIAVAHGQLRERELE
QVMRDFLQQRFNVLLCSTIIETGIDIPNANTIIINRADKFGIAQLHQLRGRVGRSHHQAY
AYLLTPEYISKDAEKRLDAIAAADELGAGFTLAMQDLEIRGAGEILGEGQSGEMMQVGFS
LYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHSPALLPEDYCPDIHERLVLYKRLATC
ETEQDINAVHEELVDRFGLPEQPVKTLIESHRIRLIAKEMGIDAIDATAEAATFTFGKNN
QIDPADIIMLMQSNKNYRLAGADKLRVSAVMDNIETRIQTVKTVLRKLQGK
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgacttattccattcccgcccccgctcaaaaatcccattggaacggcctttcccgcggc
agcctgccgtgggcgttggcacaatatctgccggaaaaaaaactgaaggtcatccttacc
caagacgtagaacaggcattgcgcctgcataccgcttggcagtttttccgcccgcaagat
aacgccgtattcctgcccgattgggaaacgctgccttacgaacggttttcaccgcatcac
gatttggtatccgagcggctttcggctttatggcaggtgaaaaacgggcaggctgatgtt
ttgattgtgccggtatccaccgccatgcagaagctggcgccggtatcgtttttgctcggg
cgcacattttggctgaaaaccgggcaaacactcgatatcgaagccttgcgagaaaatctg
gttgaagccggatacagcaatgtttccaatgtgattgccgccggtgaatttgccatgcgc
ggcggtattttggatatttttccgatgggcagcgaactgccgtaccgcttggatttattc
ggcgacgaaatcgacagcatcaaaacattcgaccccgacagccaacgcacgctggcgccg
atttcagaaatccgcctgctgcccgcacatgaatttccttccgatgacgacgcgcaaaaa
atattccgcgcccgtttccgcgaagaaatcgatgccgactacaatgccgccgccgtttat
aaagccgtaagcagcggccattacggtgccggtgtcgaatattatctgccgttgtttttt
gaaaacgaattggccaccttgttcgactatatcggcgaagacgcattattggtttttgtc
ggcgatgtgtatgccgaagcttcgcgcttttggggcgatgtcaaaacccgttttcagatg
gcgcagggcgacgaaacctacccgcctttgcatccacggcatttgtatctcagtgaagac
cagtttgcaggccgtctgaaactttatccgcagatattgcccgactttagcgcacccgaa
catcaattgcccgatgtggccgttaaccgccagtcggaaaccccgctggccgctttaaag
cattttcagacggcctttaacgggcaggttttattgtgtgccgaaagtgccggccgccgc
gaaaccatgctcggctttttcgcccagcacggcctcaaaccgcaaagcgtagacggctgg
caggcatttctcgacagcggcgtagcgttggccattaccgtaaccccgctggcctatggc
ttccaactgcccgaccaacccccgctggccgtgattaccgaatccgacctctatcaatac
gttgcccgcagccgcaatgtgcgccgccgcaaacatgccgccgtttcagacggcctgttg
cgcgacttggccgaaatcaatatcggcgaccccgttgttcacgaagaacacggtatcggc
cgctatatgggcttggtgaatatggatttgggcgagggcgaaaacgaaatgatgctgctc
gaatacgccaacgaagcccagctttatgtgccggtttcgcagctacacctcatcagccgc
tattccggccatgctcatgaaaacgtgcagctacaccggctgggcaccgccgcttggaac
aaagccaaacgcaaagccgccgaaaaagcccgcgataccgccgccgaattgctgaattta
tacgcccaacgcgccgcccaagaaggctttaaattcccactcaacgaaatcgactatcaa
gccttttcagacggcttcggctatgaagaaaccgaagatcaggccgctgccattgccgcc
gttttaaaagaccttacccaaggcaaaccgatggacaggctggtgtgcggcgatgtcggc
ttcggcaaaaccgaagtggcattacgcgccgctttcgtagccgtgatgggcggcaaacaa
gtggccgtacttgccccgaccaccttattggtcgagcaacacgataaaaacttcagcgac
cgcttcgccgattttccggtgaaagtcgcctcgctttcccgtttcaacagcagcaaacaa
accaaagctactttagcgggcatggccgacggcaccgtcgatatcgttatcggtacgcac
aaactggttcaagacgatattgttttcaaaaacttaggcctagtaattatcgacgaagaa
caccgcttcggcgtgcgccaaaaagagcagctcaaacgcctgcgcgccaatgtcgatatt
ctcaccctcaccgccaccccgattccgcgcaccctcagcatggcattggaagggctgcgc
gatttctcgctgattaccaccgcccccagccgccgcttggccgtaaaaacctttgtcaaa
ccctttagcgaagccagcgtacgcgaagccgttttgcgcgaactcaaacgcggcgggcag
gttttctttctgcataacgaagtcgacactatcgaaaacatgcgcgaacggctggaaacc
ctgttgcccgaagcccgcattgccgttgcccacggccaattgcgcgagcgcgaactcgag
caggtgatgcgcgactttttgcaacagcgtttcaacgtattattgtgttccaccattatc
gaaaccggtatcgacatccccaatgccaacaccatcattatcaaccgcgccgataaattc
ggcattgcccaactgcaccaactacgcggccgggtagggcgcagccaccaccaagcctac
gcctacctgctcactcccgaatacatcagcaaagacgccgaaaaacggctggatgccatt
gccgccgccgacgaattgggtgcaggcttcaccctcgccatgcaagaccttgaaatacgc
ggcgccggcgaaatactcggcgaaggccaaagcggtgaaatgatgcaggtcggcttcagc
ctctacaccgaaatgctcaagcaagccgtgcgcgacctcaaaaaaggccgccaacccgat
ttagacgcgcccttgggtgtcaccaccgaaatcaaactacatagccccgcactactgccc
gaagactactgccccgatatccacgaacgcttagtgctctacaaacgcttggctacctgc
gaaaccgagcaggatatcaacgccgtacatgaagaactggtcgaccgcttcggcctgccc
gaacagccggttaaaaccctgatcgaaagccaccgcatccgcctgattgccaaagaaatg
ggcattgacgccatagacgccaccgccgaagccgccacgtttacctttggcaaaaacaac
caaatcgaccccgccgatattattatgctgatgcaaagcaataaaaattaccgcttggcc
ggcgccgataagctcagagtcagcgcggtgatggacaatatagaaacccgcattcagacc
gtgaaaaccgttttgcggaaattgcaggggaagtga
DBGET
integrated database retrieval system
