Neisseria zoodegmatis: SAMEA4504057_0022
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Entry
SAMEA4504057_0022 CDS
T06683
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
nzo
Neisseria zoodegmatis
Pathway
nzo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
nzo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
SAMEA4504057_0022 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nzo03021
]
SAMEA4504057_0022 (rpoB)
03400 DNA repair and recombination proteins [BR:
nzo03400
]
SAMEA4504057_0022 (rpoB)
Enzymes [BR:
nzo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
SAMEA4504057_0022 (rpoB)
Transcription machinery [BR:
nzo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
SAMEA4504057_0022 (rpoB)
DNA repair and recombination proteins [BR:
nzo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
SAMEA4504057_0022 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
SopD
Motif
Other DBs
NCBI-ProteinID:
SNU78560
UniProt:
A0AB38DMZ6
LinkDB
All DBs
Position
1:complement(30119..34297)
Genome browser
AA seq
1392 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANVLDVPFLLATQLDSYSKFLQLGKSFDQRNDEGLQAAFNSI
FPIVSHNGYARLEFVHYVLGEPLFDIPECQLRGITYASPLRARIRLVILDKESSKPTVKE
VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVSILLKALGYDNEKILDTFYDKETFYLSKDG
VQTDLIAGRLKGETAKLDIVDKEGNVLVAKGKRITAKNIRDISNAGLTRLDVDPETLLGK
VLARDLIVPDTGEVLATANEEITEELLAKLDIHGVEKVETLYINELDQGGYISNTLRTDE
TADQQAARVAIYRMMRPGEPPTEEAVELLFNRLFFNEDSYDLSRVGRMKFNTRTYEQKLS
DVQAESWYGRLLNQTFAGAAEKGGFVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV
RSVGELVENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ
FMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN
SLSVYARTNEYGFLETPYRRVVDGKVTDEIDYLSAIEEGRYVIAQANAELDSDGRLTGDL
ITCREKGETIMATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL
RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRIVVRVHDDEATAGEVGVDIYNL
VKFTRSNQSTNINQRPVVKAGDVLQRGDVVADGASTDLGELALGQNMTIAFMPWNGYNYE
DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI
GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV
FTREGIQRDKRAQSIIDSELKRYRQDLSDQLRIFDNDAFSRIERMIVGQKANGGPLKLAK
GSDITSEYLASLPSKHDWFDIRLADESLAKQLELIKVSLQQKREEADALYEVKKKKLTQG
DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLAEQRKVGEIREFLNKLYNSSGKQENLD
ELSDEEILALAENLKRGATFASPVFDGAKENEIYEMLDLAYPSDDPEVEKLGFNNSKTQI
TLYDGRSGEPFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAYTLQEMLTVKSDDVAGRTKMYENIVKGEHKIDAGMPESFNVLVKEI
RSLGLDIDLERY
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcttttaccgagaaaaaacgtatccgtaagagttttgctaaacgtgccaat
gtattggatgtgccgtttctcttggcaactcaattggattcttattctaaatttttacag
ttaggcaagtcttttgatcagcgtaatgacgagggtcttcaagctgcttttaattctatt
ttcccgattgtgagtcacaatggttatgctcgattagagtttgttcactatgttttgggt
gaaccattgtttgatattcctgaatgtcaacttcgtggtattacatacgcttctcctttg
cgtgcacgtatccgtttggtcatactggataaagaatcttccaagcctacggtaaaagaa
gttcgtgaaaacgaagtatatatgggtgaaattccattgatgacgccgagtgggtcattt
gtcattaatggtaccgagcgtgtgattgtgtctcaattacaccgttctcccggtgttttc
tttgaacatgaccgcggtaaaacgcattcatcaggcaaattgttgttctcggctcgaatc
attccttaccgtggatcttggcttgactttgagtttgaccccaaagacttattgtatttc
cgtattgaccgtcgtcgtaagatgcccgtatctatcctattgaaagctttgggatatgat
aacgaaaagattttggatactttctatgataaagaaacgttctatctttcgaaagatggc
gttcaaacagatttaattgcaggccgtctgaaaggggagactgcgaagctcgatatcgta
gataaagaaggtaatgtattggttgcgaaaggcaagcgcattacggctaagaatattcgc
gatatcagcaatgcaggtttaacccgcttggatgttgatcctgaaactttgttaggcaaa
gttttggctagagatttgatcgttcctgatactggtgaagtgttggcgaccgccaacgaa
gagattaccgaagagttgttggctaaacttgatattcatggtgttgaaaaagtagaaacc
ctgtatatcaacgagttagatcaaggtggctatatttccaacactctgcgtacggatgaa
actgccgaccagcaggctgcgcgtgtggccatttaccgtatgatgcgcccgggcgaacct
cctaccgaagaagctgtggagttgctgttcaatcgcttgttcttcaatgaagacagctac
gatttgtcacgtgtaggccgtatgaaattcaatacacgtacttatgaacaaaaattaagc
gatgttcaagctgaatcatggtacggacgcttattgaatcaaacttttgccggtgcggct
gaaaaaggcggttttgtattaagcgtggaagatattgttgcttctattgccactttggtt
gaattgcgcaatggtcatggcgaagtggacgacatcgaccatttgggtaaccgtcgtgtg
cgttcggtgggcgaattggtggagaaccagttccgcagcggcttggctcgtgttgagcgg
gcggtgaaagagcgtttgaatcaggcggaatctgaaaatctgatgcctcatgatttgatt
aatgctaagccggtttctgccgcaattaaagagtttttcggttccagccagttgagccaa
tttatggatcagactaacccgctgtcggaaattacccacaagcgtcgtgtgtctgcttta
ggtccgggtggtttgacacgtgaacgtgcaggctttgaggtgcgcgacgtacacccgact
cactatggtcgtgtgtgtccgattgaaacacctgagggtccgaacatcggtttgattaac
tcattgtctgtttacgcacgcaccaacgaatacggtttcttggaaaccccataccgccgt
gtggtggatggtaaagtaaccgatgaaatcgattatttgtctgctatcgaagaaggtcgc
tatgtgattgcacaggcaaacgccgaattggattcagacggccgcttgaccggtgacttg
attacctgtcgtgaaaagggcgaaaccatcatggctactgccgaccgtgtgcaatacatg
gatgtagcgactggccaagtggtttctgtggcagcatcgctgattcctttcttggagcat
gacgatgcgaaccgtgccttgatgggtgccaacatgcaacgtcaagcagtgccttgtttg
cgtcctgaaaaaccgatggtaggtaccggcattgagcgctcggtagccgtagactccgct
actgcaattgttgcccgtcgtggtggtgttgtggaatatgtcgatgccaaccgtatcgtt
gttcgcgtgcacgatgatgaagcgactgcgggtgaagtgggtgtggatatttacaacttg
gtgaaatttacccgctcaaaccaatcgaccaacattaaccaacgccctgtggtaaaagca
ggtgatgtgctgcaacgcggcgacgtagtggccgatggcgcttctaccgatttaggcgag
ttggcattaggtcaaaacatgaccatcgccttcatgccgtggaacggttacaactacgaa
gactcgattctgatttctgaaaaagtggcagccgatgaccgctacacttctatccatatc
gaagaattgaatgtggtggcgcgtgataccaaattgggcgcggaagacattacccgcgat
atcccgaacttatccgagcgcatgcaaaaccgtttggacgaatccggtatcgtttatatc
ggtgcagaagttgaagccggtgatgttttggtaggtaaagtaacgcctaaaggcgaaacc
caactgacaccagaagaaaaactgctgcgtgccattttcggtgaaaaagcatcagacgta
aaagatacgtcattgcgtatgcctaccggtatgagcggtacggttatcgacgtgcaggta
tttacccgcgaaggtattcaacgcgacaaacgtgcccagtcgattattgattcggaactg
aaacgctaccgccaagatttgagcgaccaactgcgtattttcgataacgatgctttcagc
cgtatcgagcgcatgattgtcggccagaaagccaacggaggcccgctgaaactggccaaa
ggcagcgacatcacttcagaatatctggcatcgttgccgagcaagcacgattggttcgat
atccgtttggccgacgaatctttggctaagcagctggagttgatcaaagtcagcctgcaa
caaaaacgcgaagaagccgatgccttgtatgaagtgaaaaagaaaaagctgacacagggc
gacgaattgcaacccggcgtacaaaaaatggtaaaagtattcatcgccatcaaacgccgc
ctgcaagccggtgacaaaatggccggccgccacggtaacaaaggtgtggtatcgcgcatt
ctgccggtggaagacatgccttatatggcagacggccgccccgtagatatcgtactgaac
ccgctgggcgtaccgtcccgtatgaatatcggtcagattcttgaggttcacttgggctgg
gcggcaaaaggtattggcgagcgcatcgaccgcatgttggccgagcagcgtaaagtaggt
gaaatccgcgagttcctgaataaactctacaacagcagcggtaagcaggaaaatctggac
gagctgagcgatgaagaaattttagctttggctgagaatctgaaacgcggagccaccttt
gcctcgccggtatttgacggtgctaaagaaaacgaaatctacgagatgctcgacttggct
tatccgagcgatgatcccgaagtagaaaaactcggcttcaacaacagtaaaacccaaatc
actttgtatgacggacgttcaggtgaaccgttcgaccgcaaagtaaccgtcggagtgatg
cactacctgaagctgcaccacttggttgacgagaaaatgcacgcccgttctaccggcccg
tacagtctggttacccaacagccgctgggtggtaaagcccaattcggtggccagcgtttc
ggtgagatggaggtgtgggcactggaagcttacggtgccgcctacacgctgcaagagatg
ctgaccgtgaagtcggatgacgttgccggccgtaccaaaatgtatgaaaacattgttaaa
ggcgagcacaaaatcgatgccggtatgcctgaatccttcaacgtattggttaaagagatt
cgctcattgggcttggatatcgatctggaacgttactaa
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integrated database retrieval system
