Neisseria zoodegmatis: SAMEA4504057_1978
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Entry
SAMEA4504057_1978 CDS
T06683
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
nzo
Neisseria zoodegmatis
Pathway
nzo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nzo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
SAMEA4504057_1978 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nzo03400
]
SAMEA4504057_1978 (recB)
Enzymes [BR:
nzo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
SAMEA4504057_1978 (recB)
DNA repair and recombination proteins [BR:
nzo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
SAMEA4504057_1978 (recB)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Anticodon_2
ResIII
Motif
Other DBs
NCBI-ProteinID:
SNU80453
UniProt:
A0AB38DU38
LinkDB
All DBs
Position
1:2144449..2148072
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AA seq
1207 aa
AA seq
DB search
MPAQPFNPLTIPISGTSLIEASAGTGKTYGIAALFTRLIVLEKMPVESVLVVTFTKAATA
ELKTRLRARLDDVLSVLENVPDAAHHSDGLAAYCAQHHEGDVFLPNLLEAALQQESQERL
TVRLKAAISRFDNAAIYTIHGFCQRLLRDYAFFCQAPFDVELTEDTRERLLVPAQDFWRE
NVSHNPLLAKLVFEHRHTPETMLSEIKSFIGRPYLAFRRPESNIETAQKTLAECWENIRA
QLPELAQTFWTIHPVLNGNKYRKNTFQSVFALLEAAAESNTLPSNHDKLPLFAADALEAA
TKKTAAPDTAAFARLNILARLGECFNGLAEAEQNTLIQLQLDMLQYIGNALEAEKKSRRE
RSFDDLLLDVYHALIRSPHREQLAQTVAAVWKAALIDEFQDTDPLQYEIFKQLFIRQGNP
LFLVGDPKQAIYSFRGADIYAYMQAAEDADARYTLTTNFRSHAKLINGIGALFKQKHRPF
VLDSIDYADVNAARSESRLNPPKTAVSIRWLNHETDGGGNKDALRSRAADNCADEIAAVL
NDAAAGRLNYQKNTAGPAVPLQSGQIAVLVRTHNEGQMIAKALKQRNIQSVLLQRESVFA
SEEAEAVDALIGFWLQPQRTETLRFVLGGILFRYTAAMLHELNRNETALLSWINSAQTAA
EVWQQHGIYAAMQHFAAEHGIEARLLSRGSTRSLTNYHQLIERLAEEDEQSRSPAALREW
LKNQIQTAQNAEHPKGENNLLRLESDENLVKIVTMHAAKGLQYPLVYCPFVWDAKENNLK
GWQILHRSHQTTELLHEKQLDDADRNQLADENLSENLRLLYVALTRAEEHLVIYAAYCSN
TPDNTFAYLLEGTADSRRADIAAAYTAAKKEAATMLKNNWQRFIGNAPADTDFSFTDTPP
EQAVYRLPPVSDGLYQAAGVSARPFEFIRHTSFTGLSRHTRNTDEHTREELQPAIDTAET
ATDAPLSAMPSEHTDTRSIHTFPRGASAGVCLHEILETFDFGSPAAAQSETVAATLEHYG
FDAGWLPAVTAMLDHTRLSPLDGQTALADIPATQRLAEMGFTLFMHDFTLNRLQQWFAET
EHGLPAECATAAKLLDFNDVNGFLNGFIDMVCRDSDGLVTVIDYKSNHLGYTAEDYTQAA
MNEAVAHHHYYLQALIYAIATARHFASRQQPLHTVAVRYLFLRGLDGSGNNGIWSWNIDT
ALLREWL
NT seq
3624 nt
NT seq
+upstream
nt +downstream
nt
atgccagcacaaccgtttaacccgctcaccattcccatttcgggcacgtcccttatcgaa
gcctctgccggcacaggcaaaacctacggcattgccgctttgtttacccgtttgatcgtg
ctggaaaaaatgcccgtagaaagcgtgttggtcgttacctttaccaaagccgctaccgcc
gaactgaaaacccgcctgcgggcgcggttggacgatgtgttatcggtattggaaaacgtg
ccggatgccgcacaccattcagacggcctcgccgcgtattgcgcgcaacaccacgaaggc
gacgtatttttacccaacctgctcgaagccgccttgcagcaagaaagccaagagcgcctt
accgttcgcctgaaggcagccatcagccgcttcgacaatgccgccatttataccattcac
ggcttctgccaacgcctgctgcgcgattatgcctttttctgccaagcccctttcgacgta
gaactaaccgaagacacgcgcgaacgcctgctggtgcccgcccaagacttctggcgcgaa
aacgtgtcgcacaatccgctattggccaaactcgtgttcgagcaccgccacacgcccgaa
accatgctttccgaaatcaaaagctttatcggccgcccctatctggctttcagacggcct
gaaagcaatatcgaaaccgcacaaaagacattggcggaatgctgggaaaatatccgcgcc
caactgcccgaattggcgcaaaccttttggacaatccaccccgttttaaacggcaacaaa
taccgcaaaaacaccttccaaagcgtttttgccttactggaagccgcagcagaaagcaac
accctgccttccaaccacgacaaactccccctttttgccgccgacgctcttgaagccgcc
accaaaaaaaccgccgcgcccgacaccgccgcctttgcccgcttaaacatactcgcacgg
ctgggcgaatgcttcaacggtttggccgaagccgaacaaaacaccctgatacagctgcaa
ctcgacatgctgcaatacatcggcaatgcgttggaggccgaaaaaaaatcccgccgcgaa
cgcagtttcgacgacctgctgctcgatgtttaccatgcccttatccgcagcccgcaccgc
gaacaattggcacaaaccgttgcagccgtttggaaagccgccctgatcgacgaatttcaa
gacaccgaccccctgcaatacgaaatattcaaacaactgtttatccgtcagggcaacccg
ctgtttttggtcggcgatcccaaacaggcgatttacagctttcgcggagccgacatctac
gcctacatgcaggccgccgaagatgccgacgcccgctacaccctgaccaccaacttccgc
agccacgccaaactgatcaacggcatcggcgccttgttcaaacagaaacaccgccccttc
gtgctcgacagcatcgactatgccgatgtaaacgccgcccgcagcgaaagccgtctgaat
ccgcccaaaaccgccgtttccatacgctggctcaaccacgaaaccgacggcggcggcaac
aaagatgccctgcgcagccgtgcggcggataactgtgccgacgaaatagccgccgttctc
aacgatgccgcggcaggccgtctgaattatcagaaaaacaccgccggccccgccgtgccg
ctgcaatcggggcagattgccgtactcgtgcgcacccacaacgaagggcagatgattgcc
aaagccctgaaacaacgcaacatccaaagcgtgctgctgcaacgcgaatcggtgtttgcc
tcagaagaagccgaggccgttgacgctctgatcggcttctggctgcaaccacaacgcacc
gaaacattgcgcttcgtgctcggcggcatattgttccgctacaccgccgccatgctccac
gaactcaaccgcaacgaaaccgcactgctctcgtggatcaactccgcccaaaccgccgcc
gaagtatggcagcaacacggcatctacgccgccatgcagcactttgccgccgaacacggc
atcgaagcccgcctgctctcgcgcggcagcacccgcagtctcaccaactaccatcaactg
atcgaacgcttggccgaagaagacgaacaaagccgctcccccgccgcactccgggaatgg
ctcaaaaaccagattcagacggcccaaaacgccgaacatcccaaaggcgaaaacaatctg
ctgcggctcgaaagcgacgaaaacctcgtcaaaatcgtgaccatgcacgccgccaaaggc
ttgcagtacccgctcgtatattgcccgtttgtgtgggatgccaaagaaaacaacctcaaa
ggctggcagattctgcaccgttcccaccaaaccaccgaactgctgcacgaaaaacagctc
gacgacgccgaccgcaaccagctcgccgacgaaaacctgagcgaaaacctgcgcctgctg
tatgttgccctcacccgcgccgaagagcatttagttatctatgccgcctattgcagcaac
acgcccgacaacaccttcgcctatctgctcgaaggcaccgccgacagccgccgcgccgac
atcgccgccgcttataccgccgcaaaaaaagaagccgccaccatgctgaaaaacaactgg
cagcggttcatcggcaatgcccctgcggataccgacttcagctttaccgacaccccgccc
gaacaggcggtttaccgattgccgcccgtttcagacggcctctaccaagcagccggcgtt
tctgcacgcccgttcgagttcatacgccataccagctttaccggcttgagccgccacacc
cgcaacaccgacgaacatacccgcgaagaactgcaaccggccatcgacacagcggaaacc
gcaaccgacgcacctttatccgccatgccgtctgaacacaccgatacccgcagcatccac
accttcccgcgcggcgcaagcgcaggcgtgtgcctgcacgaaatactcgaaaccttcgat
ttcggctctcccgccgccgcacaaagcgaaaccgttgccgccacgctggaacactacggt
ttcgatgccggctggctgcccgccgttaccgccatgctcgaccacacccgcctctcccca
ctcgacggccaaaccgcgctggccgacattcccgccacacaacgccttgccgaaatgggc
tttaccctgtttatgcacgacttcacactcaaccgtttgcagcaatggttcgccgaaaca
gaacacgggctgcccgccgaatgcgccaccgccgccaaactgctcgacttcaacgacgtt
aacggttttttaaacggcttcatcgatatggtctgccgcgattcagacggcctcgttacc
gtaatcgactataaatccaaccatttaggctacaccgcagaagattacacccaagcagcc
atgaacgaagccgtcgcccaccaccactattacctgcaagccctgatttacgccattgcc
accgcccgtcacttcgcctcacgccagcagcccctgcacaccgttgctgtgcgctatctc
tttctgcgcggcttagacggcagcggcaacaacggcatctggtcgtggaacatcgacacc
gccttattgcgggaatggctgtaa
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