Neisseria zoodegmatis: SAMEA4504057_2130
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Entry
SAMEA4504057_2130 CDS
T06683
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
nzo
Neisseria zoodegmatis
Pathway
nzo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nzo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SAMEA4504057_2130 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nzo03019
]
SAMEA4504057_2130 (rne)
03009 Ribosome biogenesis [BR:
nzo03009
]
SAMEA4504057_2130 (rne)
Enzymes [BR:
nzo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
SAMEA4504057_2130 (rne)
Messenger RNA biogenesis [BR:
nzo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
SAMEA4504057_2130 (rne)
Ribosome biogenesis [BR:
nzo03009
]
Prokaryotic type
rRNA processing factors
SAMEA4504057_2130 (rne)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Zn_ribbon_InsA
Motif
Other DBs
NCBI-ProteinID:
SNU80596
UniProt:
A0AB38DU47
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All DBs
Position
1:2302030..2304918
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AA seq
962 aa
AA seq
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MKRMLFNATQAEELRVAIVDGQTLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY
GTDRHGFLPFKEVSRSYFQDYEGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFISL
AGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAELDVPRGMSLIARTAGIGRSVEELQW
DFNYLQQLWQAIEEAGKAHNEPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQISE
FMSYVMPNNVGRLKLYKDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALVSID
VNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENAKHQRDVENVL
RDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHIACPRCAGTGVIRSIESTALHV
LRIIQEEAMKDNTGEVHAQVPVDVATFLLNEKRAELFGMEERLDVSVFLIPNIHLENPHY
EITRVRTDDVDDNAEPSYKRVAAPEEDENAKPFGGEKAKAARPEPAVKGVKHTQPAPIVV
ETPPSSSWWSGFKSWLGKVFSGDKKEPEKAPEAEKSEKRNGNRSGNRRPSNRRQHPRRNQ
QLKRQDESVKEEAPVIEAETKESAKESTREPRGNRRGQNDNRERNRQSQAASESRQNESE
TKPAAKENGNNEQRQDNRRRNRAEKPATPAVNALAATADNAPETVAVATAEPVRTEKADG
KERESRSSRQERGRNRDRDQRDRRNSSKKRNIPSAAKIEQYLSIAEAADKVRFAVAHVFG
EAEETPLAVAVSAPLAETNAAVAAEADNRPLVVVVPEIETDTAEAAPAPALFAVESAAPA
AAVEAVTASEQSIIETAVANAEEALSKVIGITHIEETPEAESGAAVPAAESLAKPAETAA
ASVSDGLDLGGLVLVQTRADALEAAAEWSQPETAIGLRRADMPKAVETSVSDTPLVQVET
QK
NT seq
2889 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgtatgctatttaatgccacgcaagccgaagagctgcgcgtggcgattgttgat
ggacagacccttttggatctggacatcgaaacgctgggcaaagaacagcgtaaaggcaat
atctacaagggtatcatcacccgcatcgaaccgtcgctggaagcgtgcttcgtcgattac
ggcaccgaccgccacggtttcctccccttcaaagaagtttcccgttcctatttccaagat
tatgaaggcggtcgcgcccgcatccaagacgtgctgaaagaaggcatggaagtgatcgtg
caagtcgaaaaagacgagcgcggcaacaaaggcgcggccctcaccacctttatcagcttg
gccggccgttatctcgtgctgatgccgaacaacccccgcggcggcggcgtatcgcgccgt
atcgaaggcgaagagcgccaagaactgaaagcggctatggccgaattggacgtaccgcgc
ggcatgagcctgatcgcacgcaccgccggcatcggccgcagcgtggaagagctgcaatgg
gacttcaactacctgcaacaactgtggcaggccatcgaagaagccggcaaagcgcacaac
gaaccttacctgctgtttatggaaagctcgctgcttatccgcgccatccgcgactacttc
cgccccgacatcggcgaaattctggtcgacaaccaagaagtgtacgaccaaatttccgaa
tttatgtcgtatgtgatgcccaataacgtaggccgtctgaaactttataaagaccacacc
ccgctgttttcgcgcttccaaatcgaacaccaaatcgaaagcgcattctcacgcagcgtc
agcctgccctccggcggcgcgattgtgatcgaccacaccgaagcgctggtttccatcgac
gttaactccgcccgcgccacccgcggggccgacatcgaagacaccgccttcaaaaccaat
atggaagccgccgaagaagtcgcccgccaaatgcgtttgcgcgacttgggcggcttggtg
gtaatcgacttcatcgacatggaaaacgccaagcatcagcgcgacgtagaaaacgtcttg
cgcgatgccctcaaaaaagaccgcgcccgcgtgcaaatgggcaaattgagccgcttcggc
ctgctcgagctttcccgccaacgcctgaaacccgcattgggcgaaagcagccatatcgcc
tgcccacgctgcgccggcaccggcgtcatccgcagcatcgaatccaccgccctgcacgtg
ttgcgcatcattcaggaagaagccatgaaagacaacaccggcgaagtgcacgcacaagtg
ccggttgatgtggccacgttcctgctcaacgaaaaacgcgccgagcttttcggcatggaa
gagcgtttggacgtatccgttttcctgattcccaacatccacctcgaaaacccgcactac
gaaattacccgcgtgcgtaccgatgatgtggacgacaacgccgagccgagctacaagcgc
gtagccgcaccggaagaagacgaaaacgccaaacctttcggtggcgaaaaagccaaagcc
gcccgccccgaaccggcggtaaaaggcgtgaaacacacccaacccgcgccgattgttgtc
gaaactccgccctcttcttcatggtggtcaggcttcaaatcatggctgggcaaagtgttc
agcggcgacaagaaagaacccgaaaaagcgcccgaagccgagaaatcggaaaagcgcaac
ggcaaccgttccggcaaccgccgcccgtctaaccgccgccaacatccgcgccgcaaccag
cagctgaaacgccaagacgaaagcgttaaagaagaagctccggttatcgaagcggaaacc
aaagaaagcgcgaaagaaagcacccgcgagccgcgcggcaaccgtcgcggtcaaaacgac
aaccgcgaacgcaaccgtcaaagccaagccgcttcggaaagccgtcaaaacgaaagcgaa
accaaaccggccgcaaaagaaaacggcaacaacgagcaacgccaagacaaccgccgccgc
aaccgtgctgaaaagcctgcaactccggccgtaaacgcgcttgcagccactgctgacaat
gcaccggaaaccgttgcggttgccactgccgaacccgtgcgcaccgaaaaagcagacggc
aaagaaagggaaagccgttcttcccgccaagagcgcggccgcaaccgtgaccgcgaccaa
cgcgaccgccgcaacagcagcaaaaaacgcaacatcccgtctgccgccaaaatcgagcaa
tatttaagcattgccgaagctgccgacaaagttcgctttgccgttgcgcatgtattcgga
gaagccgaagaaacgccgctggccgttgctgtgtccgcgccgttggcagaaaccaatgca
gccgttgccgccgaagcagacaaccgtccgctggtggtagtggtgcctgaaatcgaaacc
gatactgccgaagccgcacctgcgcctgcgctgtttgccgtcgaaagcgctgcccccgcc
gcagccgtagaagctgttaccgcgtccgaacaaagcatcattgaaacggccgtagccaat
gcggaagaagcattaagcaaagtcatcggcatcacgcatatcgaagaaacgcctgaagct
gaatctggcgcagccgttccagccgctgagtctttggcaaaacccgctgaaaccgccgca
gcaagcgtttcagacggcctcgacttaggcggtttggtgttggtacaaacccgcgccgat
gctttggaagccgccgccgaatggtcgcagccggaaaccgcaatcggcctgagacgcgcc
gacatgcccaaggcagtagaaacttctgtcagcgatactccgctggtgcaagtggaaacc
caaaagtaa
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