Strawberry lethal yellows phytoplasma (CPA): SLY_0060
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Entry
SLY_0060 CDS
T02674
Symbol
hupB
Name
(GenBank) Hypothetical Protein hupB
KO
K03530
DNA-binding protein HU-beta
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nzs03032
]
SLY_0060 (hupB)
03036 Chromosome and associated proteins [BR:
nzs03036
]
SLY_0060 (hupB)
03400 DNA repair and recombination proteins [BR:
nzs03400
]
SLY_0060 (hupB)
DNA replication proteins [BR:
nzs03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
SLY_0060 (hupB)
Chromosome and associated proteins [BR:
nzs03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
SLY_0060 (hupB)
DNA repair and recombination proteins [BR:
nzs03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
SLY_0060 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-CCDC81_bac_1
Motif
Other DBs
NCBI-ProteinID:
AGL89986
UniProt:
R4RW27
LinkDB
All DBs
Position
57880..58170
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AA seq
96 aa
AA seq
DB search
MTKKELIKNIAVMNNTSVTQTQDFYNSFENALIEAITSNEEVVLSPQLGKFILKSQKARL
GRNPQTGKKLKIPAKTVVNFKLSKTLKDGVKNLKLK
NT seq
291 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaaaaagaattaatcaaaaacatcgcagtaatgaataacacttcagttactcaa
acgcaagatttttacaactcgtttgaaaatgctttaattgaagcaatcacatcaaacgaa
gaggtagttttatccccccaacttggtaaattcattttaaaaagccaaaaagcccgttta
ggacgaaatcctcaaacaggtaaaaaactaaaaatccctgcaaaaactgtggtaaatttc
aaactatcaaaaaccctcaaagatggagttaaaaaccttaaattaaaataa
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