Strawberry lethal yellows phytoplasma (CPA): SLY_0329
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Entry
SLY_0329 CDS
T02674
Symbol
dnaE
Name
(GenBank) DNA polymerase III alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nzs
Strawberry lethal yellows phytoplasma (CPA)
Pathway
nzs03030
DNA replication
nzs03430
Mismatch repair
nzs03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nzs00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SLY_0329 (dnaE)
03430 Mismatch repair
SLY_0329 (dnaE)
03440 Homologous recombination
SLY_0329 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nzs03032
]
SLY_0329 (dnaE)
03400 DNA repair and recombination proteins [BR:
nzs03400
]
SLY_0329 (dnaE)
Enzymes [BR:
nzs01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
SLY_0329 (dnaE)
DNA replication proteins [BR:
nzs03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
SLY_0329 (dnaE)
DNA repair and recombination proteins [BR:
nzs03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
SLY_0329 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DUF655
Motif
Other DBs
NCBI-ProteinID:
AGL90249
UniProt:
R4S0B8
LinkDB
All DBs
Position
complement(274910..277666)
Genome browser
AA seq
918 aa
AA seq
DB search
MRGVFYLQSYYSLLDSLLPLEKLVLKAKENDYEFVALSDDYNLYGMPTFLQLCQKHDIKP
ILGLKINFLWKNQTGELLVYAKNDQGIKNLIQLATASKKEAQSHLHLEQIEALGKDLFII
ICGLCPFWEKIFVNDQKNEFQEVLEKLKTIFSEIFLGISFQSFFLEKLSDNLIDFSTHFE
IPCLPVNKTNYDDAKAQETYQILAKMKNKTIDSEIDLSFLTKSEFDIRYQKYPQIMDSLK
QLIPKINYQTPLKKNFSLPSYLDFIEKKEKDLPKEVDFEKPEKKLFQNLDAKKYLKKIVY
QGLEKFLNPSKSKYEKYAQRINEELKIINDLNYENYFLIVSDLVKYAKKNNILVGPGRGS
SSGSLVCFCLEITEIDPLKYNLIFERFLNPQRKTMPDIDLDFPDNKREIVIQYIRQKYGL
HHVANIITFGSFAKKNAIIKELLKFKKLMPFQEKQLFHFLENQKPNQITDDLDDQIKNLL
QIASFLEGLPRFTGTHPAGIILSKDNLLQNIPLQKSNHLNLLQTQWEAKELETMGLLKID
LLGLHSLTIIEQIIAAIKESQKDFNLFSIPLNDPKTYQLLSNAKTLGVFQLESGNAKKIL
TRMAPNNFEDLVALLALNRPGPIDSFDLFLKNRKQFNSQKIYFDSLIDHILKPTHGVILY
QEQIMQIASLFAKYSLAEADLFRRAISKKDKTVLLKEKKYFLEKTQKEGHSLSLSNQIYD
YILKFANYGFNKSHSVAYSLISYRMAYLKTHYFIEFMTILLNDSLNDPLQTKALLKEAFQ
AGITLVKPNIFVSSDQYYFKNNQLFLPLSLIKGVNSNFCKELIQERHKKNFTLSFKEFKQ
RLFFCLNETILTNLILGGALDQMGLNRKTLFHNQALNEVKYYRFLPNYHIVEYEEFLSHE
LKERQKKVFGFNLDDYIK
NT seq
2757 nt
NT seq
+upstream
nt +downstream
nt
atgagaggtgttttttatttacaaagctattattctttgttggacagtttattaccttta
gaaaaattagttttaaaagctaaagaaaatgattatgaattcgttgctttaagtgatgat
tacaatttatacggaatgccaacttttttgcaattgtgtcaaaaacacgatataaaacct
attttaggccttaaaattaattttttatggaaaaaccaaacaggtgaacttttggtttat
gccaaaaacgatcaaggaataaaaaatttaattcaattagcaactgcaagcaaaaaagaa
gctcaaagccatctccatctagaacaaatagaagctttaggaaaagatttatttattatc
atttgcggactttgtcctttttgggaaaaaatttttgtcaacgaccaaaaaaatgaattt
caagaagtattagaaaaattaaaaacaatcttttctgaaatttttttaggaatttctttt
caaagtttttttttagaaaaattatccgataatcttatagattttagcactcattttgaa
ataccttgtttgcctgtcaacaaaacgaattatgatgatgcaaaagcccaagaaacttat
caaattttggctaaaatgaaaaacaaaacaattgattctgaaatagatttatctttttta
actaaaagtgagtttgatattagatatcaaaaatatccacaaatcatggattctttaaaa
caattaattcctaaaattaattatcaaactcctttgaaaaaaaatttttctttaccttct
tacctagattttattgaaaaaaaagaaaaagatttacctaaagaagttgatttcgaaaaa
ccggaaaaaaaactttttcaaaacttggatgcaaaaaaatatttaaaaaaaatagtttat
caaggattagaaaaatttttaaatccttcaaaatcaaaatatgaaaaatacgcccaaaga
attaacgaagaattaaaaatcattaatgatttgaattacgaaaattattttttaattgta
agtgatttagtcaagtacgctaaaaaaaacaatattttagtaggtcctggaagaggttct
tcttctggttctttggtttgtttttgtttagaaattacagaaattgaccctttaaaatat
aatcttatttttgaaaggtttttgaatcctcaaagaaaaacaatgccagatattgacctt
gatttccctgataataaaagagaaatagtaattcagtatattcgtcaaaaatacggttta
catcacgtggcaaatattattacttttggaagttttgccaaaaaaaatgccatcattaaa
gaattattgaaatttaaaaaattaatgccttttcaagaaaaacaactttttcatttttta
gaaaaccaaaaaccaaaccaaataactgatgatttagatgaccaaatcaagaatttgtta
caaatagcatcatttttagaaggcctacctcgttttacaggaacccatcctgcagggatt
attttaagcaaagataacttattacaaaatattcctttacaaaaatcaaatcacctaaat
ttattgcaaactcaatgggaagcaaaagaattagaaacaatgggtttgttaaaaatagat
ttattaggccttcatagtcttactatcatagaacaaataattgcagcaattaaagaaagt
caaaaagattttaatttattttctattcctttaaatgaccccaaaacttatcaacttttg
tcaaacgcaaaaacattgggagtttttcaattggaatctggcaacgccaaaaagatttta
acccgcatggctcctaacaattttgaagatttagttgccttattagctttgaatcgccca
ggtcccatcgattcttttgatttgtttttaaaaaatcgcaagcaattcaattcccaaaaa
atttattttgattcgttgattgatcatattttaaaaccaactcatggagtcatcctttat
caagaacaaattatgcaaatagcttccctttttgccaaatatagcctagctgaagcagac
ctttttcgaagagcaatcagcaaaaaagataaaactgtcttattaaaagaaaaaaaatat
tttcttgaaaaaactcaaaaagaaggtcacagtctttctttatctaatcaaatttatgat
tatattttaaaatttgctaattatggttttaataaaagtcatagtgttgcttattctttg
attagttatcgtatggcttatttaaaaactcactattttattgaatttatgacaatttta
ttaaatgattctcttaatgatcctttgcaaactaaggctttattgaaggaagcctttcaa
gcaggaattaccttagtcaaaccaaatatttttgttagctctgatcaatattatttcaaa
aataatcaattatttttacctttaagcttaattaaaggagtgaatagtaatttttgtaaa
gaattaatccaagagcgtcataaaaaaaatttcactttatcttttaaagaatttaaacaa
aggttatttttttgtttaaacgaaactattctcactaatttaattttaggtggtgcactt
gatcaaatgggtttgaatcgaaaaactttatttcacaatcaagctttaaatgaagttaaa
tattatcgttttttaccaaactatcacattgttgaatatgaagaatttttatcacatgaa
ttaaaagaaagacaaaaaaaggtttttggttttaaccttgatgattacataaaataa
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